Histone_ChIP-seq_ENCSR888WZL
Histone_ChIP-seq ENCSR888WZL [biosample_summary="Homo sapiens iPS DF 19.11" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR888WZL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR888WZL [biosamplesummary="Homo sapiens iPS DF 19.11" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN819RRC|/analyses/ENCAN819RRC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF532VHS|/files/ENCFF532VHS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15605486 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF052TYC|/files/ENCFF052TYC/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15797479 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF532VHS|/files/ENCFF532VHS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF532VHS|/files/ENCFF532VHS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.36. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF052TYC|/files/ENCFF052TYC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR888WZL | float |
Histone_ChIP-seq_ENCSR888WZL |
Histone_ChIP-seq ENCSR888WZL [biosample_summary="Homo sapiens iPS DF 19.11" and target="H3K4me3"]
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[1.29, 99] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF538JKF.bed.gz | 1.01 MB | f1673e115f18adacc2237572ff10a4cf |
| ENCFF538JKF.bed.gz.dvc | 101.0 B | fc2ca17f264b51723eae4c7597c45dac |
| ENCFF538JKF.tabix.bed.gz | 471.05 KB | 08ebab1a14ca9cc7df62c8328454bf34 |
| ENCFF538JKF.tabix.bed.gz.dvc | 106.0 B | 5a54d685b5fb88d30a0d28ce850985fa |
| ENCFF538JKF.tabix.bed.gz.tbi | 192.11 KB | 8420792b4c5a1f87d8c1168e36cc339c |
| ENCFF538JKF.tabix.bed.gz.tbi.dvc | 110.0 B | 5696239eac8453def5b5c4ead30a0be3 |
| genomic_resource.yaml | 4.34 KB | 676c1953dd04a61812f3e145a5d17698 |
| genomic_resource_original.yaml | 4.22 KB | c4affdbaae10d2acb102431544faa226 |
| statistics/ |