Resource

Id Histone_ChIP-seq/ENCSR888NROcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR888NRO [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (74 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR888NRO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (74 years)
  • date_created: 2021-01-28T04:10:43.627039+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR888NRO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (74 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR888NRO float

Histone_ChIP-seq_ENCSR888NRO
Histone_ChIP-seq ENCSR888NRO [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (74 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR888NRO [1.73, 54.9]
n
58,435,859
mean
21.5
sd
12.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 584358591.82% 33070
chr1 5631217 2.26% 3162
chr2 4130447 1.71% 2398
chr3 3515586 1.77% 1937
chr4 2484657 1.31% 1404
chr5 3014618 1.66% 1681
chr6 3493662 2.05% 1994
chr7 2846098 1.79% 1696
chr8 2328599 1.60% 1334
chr9 2396742 1.73% 1409
chr10 2577018 1.93% 1488
chr11 3116358 2.31% 1692
chr12 3069799 2.30% 1646
chr13 1408016 1.23% 825
chr14 1869074 1.75% 1010
chr15 1832020 1.80% 1036
chr16 2186747 2.42% 1249
chr17 3128432 3.76% 1718
chr18 1126484 1.40% 657
chr19 3349833 5.71% 1919
chr20 1456686 2.26% 836
chr21 594184 1.27% 355
chr22 1233430 2.43% 680
chrX 1646152 1.05% 944
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33070 275 33352 1767.04 1336
global segment-length histogram

Files

Filename Size md5
ENCFF757WUQ.bed.gz 850.27 KB df3647bce3c362b44c3f4eae66d44b85
ENCFF757WUQ.tabix.bed.gz 375.59 KB e0eeeddcb44aff9335e0bdd9764dff35
ENCFF757WUQ.tabix.bed.gz.tbi 198.45 KB d5dfd16ef639b4d818e127b7de337837
genomic_resource.yaml 1.7 KB 4f6b3cef0030af79f7d8447ecef815ed
statistics/