Resource

Id Histone_ChIP-seq/ENCSR888EEHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR888EEH [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR888EEH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years)
  • date_created: 2021-04-30T04:18:13.896419+00:00
  • date_released: 2022-01-06
  • doi: 10.17989/ENCSR888EEH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (89 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR888EEH float

Histone_ChIP-seq_ENCSR888EEH
Histone_ChIP-seq ENCSR888EEH [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR888EEH [1.82, 49.6]
n
51,834,749
mean
19.8
sd
10.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 518347491.61% 29514
chr1 5064141 2.03% 2853
chr2 3588702 1.48% 2043
chr3 3076601 1.55% 1657
chr4 2089227 1.10% 1121
chr5 2607242 1.44% 1455
chr6 2984323 1.75% 1704
chr7 2472401 1.55% 1510
chr8 2085048 1.44% 1169
chr9 2129726 1.54% 1258
chr10 2255291 1.69% 1295
chr11 2834770 2.10% 1520
chr12 2751996 2.06% 1504
chr13 1171674 1.02% 691
chr14 1659855 1.55% 935
chr15 1635834 1.60% 958
chr16 1997928 2.21% 1161
chr17 2859348 3.43% 1623
chr18 956873 1.19% 563
chr19 3152774 5.38% 1849
chr20 1320421 2.05% 762
chr21 507182 1.09% 319
chr22 1172048 2.31% 684
chrX 1461344 0.94% 880
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29514 205 26362 1756.28 1396
global segment-length histogram

Files

Filename Size md5
ENCFF051DLA.bed.gz 725.41 KB 44b0e3e32e9362fd2852c0d929a5a423
ENCFF051DLA.tabix.bed.gz 330.34 KB 4feae9c8ab947c2d1ad7dafe7f89068d
ENCFF051DLA.tabix.bed.gz.tbi 173.85 KB 0e567cec4fac0f04492a79216afda799
genomic_resource.yaml 1.7 KB c75694ef3d47d7dbeac240127cb3d5e7
statistics/