Histone_ChIP-seq_ENCSR884QDT
Histone_ChIP-seq ENCSR884QDT [biosample_summary="Homo sapiens Loucy" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR884QDT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR884QDT [biosamplesummary="Homo sapiens Loucy" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN471YBJ|/analyses/ENCAN471YBJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN471YBJ|/analyses/ENCAN471YBJ/} has in progress subobject document {2e11f00f-586e-4fb5-aa97-42dc4a5ec3b9|/documents/2e11f00f-586e-4fb5-aa97-42dc4a5ec3b9/} audit_not_compliant: Processed unfiltered alignments file {ENCFF758OGE|/files/ENCFF758OGE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 34602128 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF859LLJ|/files/ENCFF859LLJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 35999647 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF643SQV|/files/ENCFF643SQV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF643SQV|/files/ENCFF643SQV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.95. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR884QDT | float |
Histone_ChIP-seq_ENCSR884QDT |
Histone_ChIP-seq ENCSR884QDT [biosample_summary="Homo sapiens Loucy" and target="H3K9me3"]
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[1.79, 12.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF815UIV.bed.gz | 744.24 KB | 97731a5eac621f7880b976f7877c7b2c |
| ENCFF815UIV.bed.gz.dvc | 100.0 B | 714277ab8230916ebd4906ba8f109993 |
| ENCFF815UIV.tabix.bed.gz | 374.71 KB | b5faf1ad34b4dad2ae085b8a55209b43 |
| ENCFF815UIV.tabix.bed.gz.dvc | 106.0 B | 8fcc3244ba238fab745a4785128c6920 |
| ENCFF815UIV.tabix.bed.gz.tbi | 182.92 KB | dd4bf1d97e032604180ef028f6dc45a3 |
| ENCFF815UIV.tabix.bed.gz.tbi.dvc | 110.0 B | b1d95520fac5bc2bcbefd1127055f903 |
| genomic_resource.yaml | 3.92 KB | ae09ade97d3191628b4e9cb1520ba131 |
| genomic_resource_original.yaml | 3.81 KB | 89a19d7486089c9786058fe80d00a608 |
| statistics/ |