Histone_ChIP-seq_ENCSR883XRM
Histone_ChIP-seq ENCSR883XRM [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H2AFZ"]
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| Id: | Histone_ChIP-seq/ENCSR883XRM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR883XRM [biosamplesummary="Homo sapiens hepatocyte originated from H9" and target="H2AFZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN482UAH|/analyses/ENCAN482UAH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF837ETW|/files/ENCFF837ETW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF837ETW|/files/ENCFF837ETW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.50. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR883XRM | float |
Histone_ChIP-seq_ENCSR883XRM |
Histone_ChIP-seq ENCSR883XRM [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H2AFZ"]
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[1.14, 14.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF987QKQ.bed.gz | 1.2 MB | de06a78e5c39ba918de8f61e81659cbd |
| ENCFF987QKQ.bed.gz.dvc | 101.0 B | 2c3a44ae9d3308fa3544c60e33dd648d |
| ENCFF987QKQ.tabix.bed.gz | 528.45 KB | 039fa66e9ae81cae412958d2b5c128c2 |
| ENCFF987QKQ.tabix.bed.gz.dvc | 106.0 B | ae9d3bdc3e6ca9a69cffef2ef33356f5 |
| ENCFF987QKQ.tabix.bed.gz.tbi | 243.45 KB | 3287957bab58ef3acb37cdec291a1d23 |
| ENCFF987QKQ.tabix.bed.gz.tbi.dvc | 110.0 B | 8066df34e0b5cc067b05e990e445350d |
| genomic_resource.yaml | 2.73 KB | 81ff0f140a0be07bb6bf1bdd2f89ad63 |
| genomic_resource_original.yaml | 2.6 KB | 8e9b8bdcb28e514d3dc6e5da61df297c |
| statistics/ |