Resource
| Id | Histone_ChIP-seq/ENCSR883QMZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR883QMZ [biosample_summary="Homo sapiens substantia nigra tissue male adult (81 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (81 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN910ETY|/analyses/ENCAN910ETY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF009SQK|/files/ENCFF009SQK/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 17810833 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR883QMZ | float |
Histone_ChIP-seq_ENCSR883QMZ |
Histone_ChIP-seq ENCSR883QMZ [biosample_summary="Homo sapiens substantia nigra tissue male adult (81 years)" and target="H3K4me3"]
|
 |
[1.79, 42.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 38576189 | 1.20% | 34583 |
| chr1 | 3697909 | 1.49% | 3215 |
| chr2 | 2730624 | 1.13% | 2509 |
| chr3 | 2345297 | 1.18% | 2052 |
| chr4 | 1695723 | 0.89% | 1498 |
| chr5 | 2035580 | 1.12% | 1790 |
| chr6 | 2395465 | 1.40% | 2064 |
| chr7 | 1827477 | 1.15% | 1677 |
| chr8 | 1519358 | 1.05% | 1396 |
| chr9 | 1607940 | 1.16% | 1453 |
| chr10 | 1691031 | 1.26% | 1536 |
| chr11 | 2033776 | 1.51% | 1764 |
| chr12 | 2002533 | 1.50% | 1759 |
| chr13 | 944595 | 0.83% | 881 |
| chr14 | 1255629 | 1.17% | 1096 |
| chr15 | 1210107 | 1.19% | 1091 |
| chr16 | 1393158 | 1.54% | 1277 |
| chr17 | 1972807 | 2.37% | 1740 |
| chr18 | 778333 | 0.97% | 758 |
| chr19 | 2405033 | 4.10% | 2209 |
| chr20 | 928167 | 1.44% | 842 |
| chr21 | 394593 | 0.84% | 384 |
| chr22 | 720438 | 1.42% | 665 |
| chrX | 957162 | 0.61% | 901 |
| chrY | 33454 | 0.06% | 26 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 34583 | 250 | 10887 | 1115.47 | 880 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF615SLX.bed.gz | 746.3 KB | a211effb0ee2adbfceea0a6da218504c |
| ENCFF615SLX.tabix.bed.gz | 364.49 KB | e6e91365ca4bbed17baf87cd7c47c415 |
| ENCFF615SLX.tabix.bed.gz.tbi | 189.11 KB | fe45ab47409d370b9d85044b43305e9d |
| genomic_resource.yaml | 2.01 KB | 2c4e0fc6b1a05faec3c8fa97f615d453 |
| statistics/ |