Resource
| Id | Histone_ChIP-seq/ENCSR880SUY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR880SUY [biosample_summary="Homo sapiens H1" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN127VQW|/analyses/ENCAN127VQW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF948UXT|/files/ENCFF948UXT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8277744 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF663SAM|/files/ENCFF663SAM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13621310 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR880SUY | float |
Histone_ChIP-seq_ENCSR880SUY |
Histone_ChIP-seq ENCSR880SUY [biosample_summary="Homo sapiens H1" and target="H3K27ac"]
|
 |
[1.79, 38.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 23959521 | 0.74% | 76094 |
| chr1 | 2272996 | 0.91% | 6967 |
| chr2 | 1805594 | 0.75% | 5726 |
| chr3 | 1521714 | 0.77% | 4939 |
| chr4 | 1189340 | 0.63% | 3870 |
| chr5 | 1344999 | 0.74% | 4174 |
| chr6 | 1571481 | 0.92% | 4844 |
| chr7 | 1274576 | 0.80% | 4139 |
| chr8 | 970835 | 0.67% | 3182 |
| chr9 | 956999 | 0.69% | 3117 |
| chr10 | 1084535 | 0.81% | 3420 |
| chr11 | 1166542 | 0.86% | 3683 |
| chr12 | 1297736 | 0.97% | 4006 |
| chr13 | 633654 | 0.55% | 2034 |
| chr14 | 750137 | 0.70% | 2355 |
| chr15 | 713570 | 0.70% | 2220 |
| chr16 | 744307 | 0.82% | 2447 |
| chr17 | 1014469 | 1.22% | 3133 |
| chr17_KI270729v1_random | 189 | 0.07% | 1 |
| chr18 | 537783 | 0.67% | 1749 |
| chr19 | 911766 | 1.56% | 2996 |
| chr20 | 594251 | 0.92% | 1893 |
| chr21 | 227159 | 0.49% | 756 |
| chr22 | 425952 | 0.84% | 1355 |
| chrUn_GL000195v1 | 147 | 0.08% | 1 |
| chrX | 898655 | 0.58% | 2941 |
| chrY | 50135 | 0.09% | 146 |
| 3340 contigs with no values (128613350 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 76094 | 110 | 4952 | 314.87 | 223 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF045CUG.bed.gz | 1.58 MB | 7da6ada83c8480d07cb8d8546d9544ae |
| ENCFF045CUG.tabix.bed.gz | 766.33 KB | 2a4681b91503f7c5cf2dfea97ab33feb |
| ENCFF045CUG.tabix.bed.gz.tbi | 245.03 KB | d99a537123a15b7b27f52d1aa860ac9f |
| genomic_resource.yaml | 2.35 KB | 9c7ba0a4a77e0d9bb9e7df4bbde8a4a3 |
| statistics/ |