Histone_ChIP-seq_ENCSR878HPJ
Histone_ChIP-seq ENCSR878HPJ [biosample_summary="Homo sapiens SK-N-SH" and target="H4K20me1"]
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| Id: | Histone_ChIP-seq/ENCSR878HPJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR878HPJ [biosamplesummary="Homo sapiens SK-N-SH" and target="H4K20me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN458BWT|/analyses/ENCAN458BWT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF338XFC|/files/ENCFF338XFC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 22532546 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF428NUV|/files/ENCFF428NUV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF428NUV|/files/ENCFF428NUV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.15. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF338XFC|/files/ENCFF338XFC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF338XFC|/files/ENCFF338XFC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.42. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR878HPJ | float |
Histone_ChIP-seq_ENCSR878HPJ |
Histone_ChIP-seq ENCSR878HPJ [biosample_summary="Homo sapiens SK-N-SH" and target="H4K20me1"]
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[1.49, 31.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF626ZQQ.bed.gz | 982.91 KB | 798384aa23c1d5ac8fe5cadd7212922a |
| ENCFF626ZQQ.bed.gz.dvc | 101.0 B | b2bf41c704e477f5fe70661f90f2e15b |
| ENCFF626ZQQ.tabix.bed.gz | 443.98 KB | 685169cb8307121e847f47b8fd4bd38d |
| ENCFF626ZQQ.tabix.bed.gz.dvc | 106.0 B | dc2ce5138eeb952c21e7ab2930efe205 |
| ENCFF626ZQQ.tabix.bed.gz.tbi | 94.01 KB | d513be98d23d2880210f7376f56981a6 |
| ENCFF626ZQQ.tabix.bed.gz.tbi.dvc | 109.0 B | a849f0d0671274f5c4d8de4d9a842cfc |
| genomic_resource.yaml | 4.52 KB | 1d6b52703bbaaeed58bfc7b28fc6f726 |
| genomic_resource_original.yaml | 4.41 KB | 00257ac1748e30565b6175189ef859d1 |
| statistics/ |