Resource

Id Histone_ChIP-seq/ENCSR876DCPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR876DCP [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR876DCP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001150/
  • biosample_summary: Homo sapiens body of pancreas tissue male adult (37 years)
  • date_created: 2016-03-19T00:37:05.533625+00:00
  • date_released: 2016-07-28
  • doi: 10.17989/ENCSR876DCP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR876DCP float

Histone_ChIP-seq_ENCSR876DCP
Histone_ChIP-seq ENCSR876DCP [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR876DCP [1.4, 23]
n
21,624,420
mean
8.08
sd
3.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 216244200.67% 18576
chr1 2128365 0.85% 1800
chr2 1545161 0.64% 1306
chr3 1302671 0.66% 1052
chr4 971137 0.51% 803
chr5 1048462 0.58% 845
chr6 1307298 0.77% 1071
chr7 1092865 0.69% 969
chr8 828186 0.57% 710
chr9 874640 0.63% 775
chr10 965168 0.72% 797
chr11 1137915 0.84% 990
chr12 1132525 0.85% 931
chr13 472233 0.41% 397
chr14 735091 0.69% 634
chr15 724607 0.71% 618
chr16 834426 0.92% 749
chr17 1142959 1.37% 1014
chr17_GL000205v2_random 2168 1.17% 2
chr18 367134 0.46% 311
chr19 1277134 2.18% 1196
chr20 538291 0.84% 465
chr21 192465 0.41% 179
chr22 425591 0.84% 396
chr22_KI270732v1_random 409 0.98% 1
chrM 494 2.98% 1
chrUn_GL000219v1 2240 1.25% 2
chrUn_GL000220v1 386 0.24% 1
chrUn_GL000224v1 387 0.22% 1
chrUn_KI270333v1 2157 79.92% 3
chrUn_KI270336v1 329 32.07% 1
chrUn_KI270337v1 721 64.32% 1
chrUn_KI270438v1 1887 1.68% 4
chrUn_KI270442v1 372 0.09% 1
chrUn_KI270466v1 1048 85.00% 1
chrUn_KI270467v1 1725 44.01% 1
chrUn_KI270750v1 819 0.55% 1
chrUn_KI270751v1 594 0.39% 1
chrX 538156 0.34% 524
chrY 26204 0.05% 22
3327 contigs with no values (127498532 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 18576 240 8518 1164.11 1029
global segment-length histogram

Files

Filename Size md5
ENCFF767NIK.bed.gz 484.98 KB 69f157cde872ce5629ebe6da5f1ffc7b
ENCFF767NIK.tabix.bed.gz 212.5 KB 4814bab71fe75a650a64a9d78d4398bc
ENCFF767NIK.tabix.bed.gz.tbi 127.59 KB 658fad63f6e796e6b7fe0803feccf535
genomic_resource.yaml 1.51 KB 3535aecd0d722efcb533151a776ce3f0
statistics/