Resource

Id Histone_ChIP-seq/ENCSR875QDScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR875QDS [biosample_summary="Homo sapiens iPS DF 6.9" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR875QDS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007098/
  • biosample_summary: Homo sapiens iPS DF 6.9
  • date_created: 2015-09-16T19:16:58.389164+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR875QDS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR875QDS float

Histone_ChIP-seq_ENCSR875QDS
Histone_ChIP-seq ENCSR875QDS [biosample_summary="Homo sapiens iPS DF 6.9" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR875QDS [2.03, 9.86]
n
771,750
mean
4.2
sd
1.16

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 7717500.02% 4323
chr1 75225 0.03% 394
chr2 58062 0.02% 334
chr3 46810 0.02% 288
chr4 38977 0.02% 238
chr5 44656 0.02% 249
chr6 52547 0.03% 304
chr7 49180 0.03% 271
chr8 36129 0.02% 197
chr9 29108 0.02% 174
chr10 36284 0.03% 197
chr11 34807 0.03% 189
chr12 47588 0.04% 254
chr13 19509 0.02% 118
chr14 19522 0.02% 111
chr15 24114 0.02% 130
chr16 28266 0.03% 147
chr17 25086 0.03% 141
chr18 21915 0.03% 119
chr19 20382 0.03% 112
chr20 19320 0.03% 100
chr21 9709 0.02% 64
chr22 14979 0.03% 76
chrX 16886 0.01% 99
chrY 2689 <0.01% 17
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 4323 90 1105 178.52 145
global segment-length histogram

Files

Filename Size md5
ENCFF501WGG.bed.gz 81.89 KB 486479d93e0352fb0bcb356c9a0248a8
ENCFF501WGG.tabix.bed.gz 43.75 KB 58157c43c8df00ef928bcf05d7c09194
ENCFF501WGG.tabix.bed.gz.tbi 36.57 KB 3dff873413c3dc19f797de49f69e787a
genomic_resource.yaml 1.38 KB 5834853d7f2f7e5a0bec73a1d4bcf5d4
statistics/