Histone_ChIP-seq_ENCSR874WOB
Histone_ChIP-seq ENCSR874WOB [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR874WOB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR874WOB [biosamplesummary="Homo sapiens trophoblast cell originated from H1" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN469XKQ|/analyses/ENCAN469XKQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF358JLY|/files/ENCFF358JLY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19800701 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF673HLK|/files/ENCFF673HLK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17895895 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF358JLY|/files/ENCFF358JLY/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF358JLY|/files/ENCFF358JLY/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.96. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR874WOB | float |
Histone_ChIP-seq_ENCSR874WOB |
Histone_ChIP-seq ENCSR874WOB [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K4me3"]
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[1.36, 67.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF514ODP.bed.gz | 1.25 MB | ca49fd0c1d8f42fc2b8bbe2ec1085ec2 |
| ENCFF514ODP.bed.gz.dvc | 101.0 B | 811257e3318e04e59ed2c0ecc0431395 |
| ENCFF514ODP.tabix.bed.gz | 563.89 KB | c524865e8f66bea508636d82ec1afb74 |
| ENCFF514ODP.tabix.bed.gz.dvc | 106.0 B | 0d7fd2c716a21811de43376d46da753e |
| ENCFF514ODP.tabix.bed.gz.tbi | 260.65 KB | c33d5a97286c0b760bd65dc6a4af310d |
| ENCFF514ODP.tabix.bed.gz.tbi.dvc | 110.0 B | 139469e3f27d50193618b192de6522a8 |
| genomic_resource.yaml | 3.68 KB | 061af7e73e375779fa41f6f42c1b593f |
| genomic_resource_original.yaml | 3.55 KB | 187ee47ff296c364aa1989191e7a0768 |
| statistics/ |