Resource

Id Histone_ChIP-seq/ENCSR874NDXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR874NDX [biosample_summary="Homo sapiens BE2C" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR874NDX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005725/
  • biosample_summary: Homo sapiens BE2C
  • date_created: 2020-08-12T01:14:53.384155+00:00
  • date_released: 2020-08-28
  • doi: 10.17989/ENCSR874NDX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR874NDX float

Histone_ChIP-seq_ENCSR874NDX
Histone_ChIP-seq ENCSR874NDX [biosample_summary="Homo sapiens BE2C" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR874NDX [1.06, 6.4]
n
56,323,476
mean
2.74
sd
0.621

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 563234761.75% 83685
chr1 4346780 1.75% 6469
chr2 3847382 1.59% 5675
chr3 3765393 1.90% 5691
chr4 3345032 1.76% 5261
chr5 4378282 2.41% 6420
chr6 3274735 1.92% 5139
chr7 3431974 2.15% 5163
chr8 3391090 2.34% 5053
chr9 2934480 2.12% 4176
chr10 2723815 2.04% 3978
chr11 2783981 2.06% 3954
chr12 2784994 2.09% 4156
chr13 2123642 1.86% 3390
chr14 2044896 1.91% 2799
chr15 2272684 2.23% 3219
chr16 1632673 1.81% 2353
chr17 2321859 2.79% 3154
chr18 298555 0.37% 560
chr19 940718 1.60% 1508
chr20 1488335 2.31% 2229
chr21 627931 1.34% 1021
chr22 1183487 2.33% 1642
chrX 380758 0.24% 675
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 83685 203 9142 673.04 526
global segment-length histogram

Files

Filename Size md5
ENCFF568SKJ.bed.gz 1.97 MB ae2552048a57f270ef96098809c91a10
ENCFF568SKJ.tabix.bed.gz 900.68 KB f991a922f21be99def5356f0f7901ccb
ENCFF568SKJ.tabix.bed.gz.tbi 268.83 KB c0015be3833e4ea8e7119fd541bf9dbb
genomic_resource.yaml 1.36 KB bcee604250eaf431a61ff77ff43507f6
statistics/