Histone_ChIP-seq_ENCSR874HSH
Histone_ChIP-seq ENCSR874HSH [biosample_summary="Homo sapiens OCI-LY1" and target="H2AFZ"]
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| Id: | Histone_ChIP-seq/ENCSR874HSH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR874HSH [biosamplesummary="Homo sapiens OCI-LY1" and target="H2AFZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN361XRF|/analyses/ENCAN361XRF/} has in progress subobject document {7b96595a-1511-4a2a-b17c-0ab85caf01e0|/documents/7b96595a-1511-4a2a-b17c-0ab85caf01e0/} audit_internal_action: Released analysis {ENCAN361XRF|/analyses/ENCAN361XRF/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF399RGS|/files/ENCFF399RGS/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF399RGS|/files/ENCFF399RGS/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.34. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF483FWX|/files/ENCFF483FWX/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF483FWX|/files/ENCFF483FWX/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.30. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR874HSH | float |
Histone_ChIP-seq_ENCSR874HSH |
Histone_ChIP-seq ENCSR874HSH [biosample_summary="Homo sapiens OCI-LY1" and target="H2AFZ"]
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[1.48, 9.92] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF669ELG.bed.gz | 635.54 KB | 21890062ab51017003e40425751dda74 |
| ENCFF669ELG.bed.gz.dvc | 100.0 B | ac63945cdeeeaacf4879625b62868f63 |
| ENCFF669ELG.tabix.bed.gz | 297.57 KB | 5a92950f06acb11cb3136e858c15e4b0 |
| ENCFF669ELG.tabix.bed.gz.dvc | 106.0 B | e93365fdb0e196592c8def893fb49e23 |
| ENCFF669ELG.tabix.bed.gz.tbi | 128.38 KB | a2c0b169d1d3dddd9a7a801838508074 |
| ENCFF669ELG.tabix.bed.gz.tbi.dvc | 110.0 B | fc5e16bacfad73cd942b0ea05e07df62 |
| genomic_resource.yaml | 4.22 KB | cd5933e7c2b5198815c50720bb84a7e7 |
| genomic_resource_original.yaml | 4.11 KB | ba4747cd984952d9a2acda6dc431cd35 |
| statistics/ |