Resource

Id Histone_ChIP-seq/ENCSR872YGQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR872YGQ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR872YGQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years)
  • date_created: 2021-04-30T04:18:17.275112+00:00
  • date_released: 2022-01-06
  • doi: 10.17989/ENCSR872YGQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (89 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR872YGQ float

Histone_ChIP-seq_ENCSR872YGQ
Histone_ChIP-seq ENCSR872YGQ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR872YGQ [1.77, 49.8]
n
99,562,002
mean
8.83
sd
5.77

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 995620023.09% 71480
chr1 10028590 4.03% 7024
chr2 7287931 3.01% 5281
chr3 5920868 2.99% 4318
chr4 3848216 2.02% 2878
chr5 5216848 2.87% 3799
chr6 5160885 3.02% 3696
chr7 4495692 2.82% 3433
chr8 4089205 2.82% 2921
chr9 4769721 3.45% 3314
chr10 5346087 4.00% 3699
chr11 6083152 4.50% 4176
chr12 5006550 3.76% 3661
chr13 2262537 1.98% 1653
chr14 3381172 3.16% 2379
chr15 3384365 3.32% 2409
chr16 3525552 3.90% 2574
chr17 5674930 6.82% 3976
chr18 1988171 2.47% 1498
chr19 4280901 7.30% 3019
chr20 2889365 4.48% 2093
chr21 1086334 2.33% 795
chr22 2460798 4.84% 1713
chrX 1374132 0.88% 1171
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71480 220 78596 1392.87 903
global segment-length histogram

Files

Filename Size md5
ENCFF983DQA.bed.gz 1.53 MB bc0a727f92db4c1a3e019b8ce217e72d
ENCFF983DQA.tabix.bed.gz 746.22 KB 7280c49ba6642fd7b1901ced816c130e
ENCFF983DQA.tabix.bed.gz.tbi 222.57 KB d1b55211c1f895c18063b781abbea3f8
genomic_resource.yaml 1.7 KB 956c7fc3767da5f569a2a9592e53f84b
statistics/