Resource

Id Histone_ChIP-seq/ENCSR872ROWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR872ROW [biosample_summary="Homo sapiens BLaER1" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR872ROW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1
  • date_created: 2022-01-27T21:50:45.574241+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR872ROW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR872ROW float

Histone_ChIP-seq_ENCSR872ROW
Histone_ChIP-seq ENCSR872ROW [biosample_summary="Homo sapiens BLaER1" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR872ROW [1.19, 32.4]
n
60,720,381
mean
7.2
sd
5.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 607203811.89% 80024
chr1 5806222 2.33% 7786
chr1_KI270713v1_random 903 2.22% 1
chr2 4020403 1.66% 5434
chr3 3044774 1.54% 3977
chr3_GL000221v1_random 631 0.41% 2
chr4 1917119 1.01% 2489
chr5 2801973 1.54% 3403
chr6 2919055 1.71% 3569
chr7 2871592 1.80% 3827
chr8 2438628 1.68% 3303
chr9 2722077 1.97% 3580
chr9_KI270719v1_random 272 0.15% 1
chr10 2631244 1.97% 3555
chr11 3185678 2.36% 4163
chr12 2926681 2.20% 3689
chr13 1087478 0.95% 1402
chr14 2226892 2.08% 2874
chr14_GL000194v1_random 402 0.21% 1
chr14_KI270726v1_random 250 0.57% 1
chr15 1842533 1.81% 2559
chr15_KI270727v1_random 769 0.17% 2
chr16 3096865 3.43% 4295
chr17 4256442 5.11% 5578
chr17_GL000205v2_random 9661 5.21% 11
chr18 969289 1.21% 1245
chr19 3961226 6.76% 5051
chr20 1854627 2.88% 2613
chr21 814846 1.74% 1131
chr22 2106953 4.15% 2955
chr22_KI270733v1_random 1872 1.04% 5
chrUn_GL000195v1 1184 0.65% 3
chrUn_GL000219v1 2689 1.50% 4
chrUn_KI270438v1 2118 1.88% 4
chrUn_KI270744v1 650 0.39% 1
chrX 1195256 0.77% 1508
chrY 1127 <0.01% 2
3330 contigs with no values (127012208 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 80024 250 20804 758.78 430
global segment-length histogram

Files

Filename Size md5
ENCFF028NNH.bed.gz 1.6 MB 70ff428f6227e0c09356b31fe5daa9b9
ENCFF028NNH.tabix.bed.gz 793.75 KB 4555e3a648dbfe5530f3614e393f36b7
ENCFF028NNH.tabix.bed.gz.tbi 244.42 KB cbf2cfa515dbb35aabb0e3954778e943
genomic_resource.yaml 2.55 KB 49653dc4b3aa7fd1eeeb9ddf4028ec3f
statistics/