Histone_ChIP-seq_ENCSR869XBX
Histone_ChIP-seq ENCSR869XBX [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR869XBX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR869XBX [biosamplesummary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN160ABX|/analyses/ENCAN160ABX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF265UCI|/files/ENCFF265UCI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF265UCI|/files/ENCFF265UCI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.52. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR869XBX | float |
Histone_ChIP-seq_ENCSR869XBX |
Histone_ChIP-seq ENCSR869XBX [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K4me3"]
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[1.76, 33.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF873QDA.bed.gz | 328.13 KB | 01bf7b998b43991fb59516b9727f96eb |
| ENCFF873QDA.bed.gz.dvc | 100.0 B | 088af261d3916a0c7673aa40d4fef0b4 |
| ENCFF873QDA.tabix.bed.gz | 157.56 KB | 3663f544f695b3e6dc56685fb55c97b9 |
| ENCFF873QDA.tabix.bed.gz.dvc | 106.0 B | 38b3bad71492a96c16a7abaec9c87858 |
| ENCFF873QDA.tabix.bed.gz.tbi | 107.82 KB | 768b64d933d8eca1e559dd7ab536a38c |
| ENCFF873QDA.tabix.bed.gz.tbi.dvc | 110.0 B | 155d451a4f72b683c96f997f5e86c393 |
| genomic_resource.yaml | 2.82 KB | 5f930f6bffc7fbbf5c6fb871996c88df |
| genomic_resource_original.yaml | 2.66 KB | 09992e112a046e22a1e775eeb0aa938b |
| statistics/ |