Histone_ChIP-seq_ENCSR869WSC
Histone_ChIP-seq ENCSR869WSC [biosample_summary="Homo sapiens brain tissue female embryo (17 weeks)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR869WSC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR869WSC [biosamplesummary="Homo sapiens brain tissue female embryo (17 weeks)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (17 weeks) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN989GUL|/analyses/ENCAN989GUL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF558KPT|/files/ENCFF558KPT/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19722554 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF631IHS|/files/ENCFF631IHS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 33992837 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF558KPT|/files/ENCFF558KPT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF558KPT|/files/ENCFF558KPT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.28. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR869WSC | float |
Histone_ChIP-seq_ENCSR869WSC |
Histone_ChIP-seq ENCSR869WSC [biosample_summary="Homo sapiens brain tissue female embryo (17 weeks)" and target="H3K36me3"]
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[1.41, 16.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF713YWB.bed.gz | 2.75 MB | d83c962505dc78f0f8d3c6bbca7a4166 |
| ENCFF713YWB.bed.gz.dvc | 101.0 B | b4ba8e4ab0bd5ffc091c3c7aae2ff69e |
| ENCFF713YWB.tabix.bed.gz | 1.43 MB | 4219eddbaea0dad2be52bfafd10ec6b7 |
| ENCFF713YWB.tabix.bed.gz.dvc | 107.0 B | 0e405d0fc4fa144868620fb254aadd8b |
| ENCFF713YWB.tabix.bed.gz.tbi | 184.46 KB | d9e2aff764046f221e4cbad26b0b08e1 |
| ENCFF713YWB.tabix.bed.gz.tbi.dvc | 110.0 B | 5d3ba38eb0c5dcab5a1c2634df228390 |
| genomic_resource.yaml | 3.75 KB | 4e5a783fe5cfcea915ad8b68baf9f69e |
| genomic_resource_original.yaml | 3.61 KB | c902964307da28d49037cfd31e24f32a |
| statistics/ |