Histone_ChIP-seq_ENCSR864ECD
Histone_ChIP-seq ENCSR864ECD [biosample_summary="Homo sapiens left lung tissue male adult (40 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR864ECD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR864ECD [biosamplesummary="Homo sapiens left lung tissue male adult (40 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN390LUD|/analyses/ENCAN390LUD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN390LUD|/analyses/ENCAN390LUD/} has in progress subobject document {8a24eb12-d7ca-4e35-a5c6-8dbcb3714701|/documents/8a24eb12-d7ca-4e35-a5c6-8dbcb3714701/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF368MEO|/files/ENCFF368MEO/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF368MEO|/files/ENCFF368MEO/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.18. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR864ECD | float |
Histone_ChIP-seq_ENCSR864ECD |
Histone_ChIP-seq ENCSR864ECD [biosample_summary="Homo sapiens left lung tissue male adult (40 years)" and target="H3K4me3"]
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[2.03, 82.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF937RVI.bed.gz | 618.51 KB | 79e12b155d4e70adb11087c74021113d |
| ENCFF937RVI.bed.gz.dvc | 100.0 B | 6f5e6cef25a42b722a226c1d4a67e643 |
| ENCFF937RVI.tabix.bed.gz | 272.69 KB | c82dede5e6bf25bcef963b91ac84bf42 |
| ENCFF937RVI.tabix.bed.gz.dvc | 106.0 B | f295dba0b7b8312b261cc2864aabe875 |
| ENCFF937RVI.tabix.bed.gz.tbi | 151.92 KB | 7461b612d252ac0800f1520b78e24448 |
| ENCFF937RVI.tabix.bed.gz.tbi.dvc | 110.0 B | b9e6ceadd43bca6b370c72e45c9df429 |
| genomic_resource.yaml | 2.97 KB | 68403f43ac1b59c495aa2adc2ba14d90 |
| genomic_resource_original.yaml | 2.84 KB | 509f0ea234591ff9bfb66f89b553fb65 |
| statistics/ |