Resource
| Id | Histone_ChIP-seq/ENCSR862SCU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR862SCU [biosample_summary="Homo sapiens HUES6" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN468YSD|/analyses/ENCAN468YSD/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF688LFR|/files/ENCFF688LFR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 33830463 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed unfiltered alignments file {ENCFF722OKO|/files/ENCFF722OKO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 32941113 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR862SCU | float |
Histone_ChIP-seq_ENCSR862SCU |
Histone_ChIP-seq ENCSR862SCU [biosample_summary="Homo sapiens HUES6" and target="H3K9me3"]
|
 |
[1.35, 27.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 88687014 | 2.76% | 153295 |
| chr1 | 5297976 | 2.13% | 9469 |
| chr2 | 6042789 | 2.50% | 10888 |
| chr3 | 4463310 | 2.25% | 8227 |
| chr4 | 5186964 | 2.73% | 9368 |
| chr5 | 4954607 | 2.73% | 8898 |
| chr6 | 4224240 | 2.47% | 7759 |
| chr7 | 5709168 | 3.58% | 9463 |
| chr8 | 4915742 | 3.39% | 7931 |
| chr9 | 2650504 | 1.92% | 4783 |
| chr10 | 4261688 | 3.19% | 7158 |
| chr11 | 3727805 | 2.76% | 6522 |
| chr12 | 4146869 | 3.11% | 7010 |
| chr13 | 2445282 | 2.14% | 4422 |
| chr14 | 2881935 | 2.69% | 5017 |
| chr15 | 2076559 | 2.04% | 3658 |
| chr16 | 2774434 | 3.07% | 4174 |
| chr17 | 1784750 | 2.14% | 3098 |
| chr18 | 1951527 | 2.43% | 3481 |
| chr19 | 5969888 | 10.18% | 8678 |
| chr20 | 1683094 | 2.61% | 2800 |
| chr21 | 1516087 | 3.25% | 2443 |
| chr22 | 1309191 | 2.58% | 1853 |
| chrX | 8574374 | 5.49% | 15975 |
| chrY | 138231 | 0.24% | 220 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 153295 | 160 | 52399 | 578.54 | 437 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF359RAD.bed.gz | 2.83 MB | d78b5ac37c3eba915dacb329e15845e0 |
| ENCFF359RAD.tabix.bed.gz | 1.42 MB | 43e9a921b71ed46797ef063d325226c4 |
| ENCFF359RAD.tabix.bed.gz.tbi | 409.48 KB | 07626f119a32d2fc0a0efc1a6d8f0bec |
| genomic_resource.yaml | 2.36 KB | e84659c00aa7579d17bc8c7e5b997f9c |
| statistics/ |