Resource
| Id | Histone_ChIP-seq/ENCSR860ZCZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR860ZCZ [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN697HCQ|/analyses/ENCAN697HCQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF594ZRF|/files/ENCFF594ZRF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 42107400 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR860ZCZ | float |
Histone_ChIP-seq_ENCSR860ZCZ |
Histone_ChIP-seq ENCSR860ZCZ [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)" and target="H3K27me3"]
|
 |
[1.48, 21.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 53758511 | 1.67% | 43035 |
| chr1 | 6369682 | 2.56% | 5371 |
| chr1_KI270712v1_random | 5969 | 3.39% | 7 |
| chr1_KI270713v1_random | 5217 | 12.80% | 4 |
| chr1_KI270714v1_random | 937 | 2.25% | 3 |
| chr2 | 3279175 | 1.35% | 2793 |
| chr3 | 1595833 | 0.80% | 1391 |
| chr4 | 1605717 | 0.84% | 1089 |
| chr5 | 2133787 | 1.18% | 1602 |
| chr6 | 2574097 | 1.51% | 2098 |
| chr7 | 2599598 | 1.63% | 1930 |
| chr8 | 2175511 | 1.50% | 1757 |
| chr9 | 2554038 | 1.85% | 1845 |
| chr9_KI270717v1_random | 473 | 1.18% | 1 |
| chr10 | 2619988 | 1.96% | 2140 |
| chr11 | 2891393 | 2.14% | 2557 |
| chr12 | 2280536 | 1.71% | 1950 |
| chr13 | 985657 | 0.86% | 788 |
| chr14 | 1613458 | 1.51% | 1335 |
| chr14_KI270725v1_random | 523 | 0.30% | 1 |
| chr15 | 1529931 | 1.50% | 1372 |
| chr16 | 2402712 | 2.66% | 1809 |
| chr17 | 4172036 | 5.01% | 3026 |
| chr17_GL000205v2_random | 38946 | 20.98% | 26 |
| chr18 | 698813 | 0.87% | 631 |
| chr19 | 3856658 | 6.58% | 2747 |
| chr20 | 2879675 | 4.47% | 2175 |
| chr21 | 593239 | 1.27% | 523 |
| chr22 | 1936271 | 3.81% | 1765 |
| chr22_KI270732v1_random | 386 | 0.93% | 1 |
| chr22_KI270733v1_random | 5177 | 2.88% | 10 |
| chr22_KI270735v1_random | 692 | 1.62% | 1 |
| chr22_KI270738v1_random | 1073 | 1.08% | 1 |
| chrUn_GL000195v1 | 942 | 0.52% | 2 |
| chrUn_GL000219v1 | 5992 | 3.34% | 5 |
| chrUn_GL000220v1 | 1319 | 0.82% | 3 |
| chrUn_GL000224v1 | 1338 | 0.74% | 3 |
| chrUn_KI270438v1 | 1035 | 0.92% | 2 |
| chrUn_KI270467v1 | 1284 | 32.76% | 2 |
| chrUn_KI270744v1 | 4013 | 2.38% | 3 |
| chrUn_KI270749v1 | 1108 | 0.70% | 2 |
| chrX | 328294 | 0.21% | 258 |
| chrY | 5988 | 0.01% | 6 |
| 3324 contigs with no values (126909371 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 43035 | 215 | 61533 | 1249.18 | 725 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF711ZUL.bed.gz | 877.01 KB | 3e09ab607dc236d407863f5ed8b5a8e9 |
| ENCFF711ZUL.tabix.bed.gz | 434.73 KB | e5827bafb7abc188d3f3bec200853a04 |
| ENCFF711ZUL.tabix.bed.gz.tbi | 120.99 KB | 897e725ae58a6603a33d0699269820fa |
| genomic_resource.yaml | 1.98 KB | 0ecfed4648033bb8cca775c52fb4f5d0 |
| statistics/ |