Histone_ChIP-seq_ENCSR858LJY
Histone_ChIP-seq ENCSR858LJY [biosample_summary="Homo sapiens muscle layer of colon tissue female adult (56 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR858LJY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR858LJY [biosamplesummary="Homo sapiens muscle layer of colon tissue female adult (56 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (56 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN834SKG|/analyses/ENCAN834SKG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF693JZD|/files/ENCFF693JZD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 26995134 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF693JZD|/files/ENCFF693JZD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF693JZD|/files/ENCFF693JZD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.61. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR858LJY | float |
Histone_ChIP-seq_ENCSR858LJY |
Histone_ChIP-seq ENCSR858LJY [biosample_summary="Homo sapiens muscle layer of colon tissue female adult (56 years)" and target="H3K27me3"]
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[1.75, 19] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF582OJN.bed.gz | 466.08 KB | 7745882d274b1be236731b1b9d3eb453 |
| ENCFF582OJN.bed.gz.dvc | 100.0 B | dcf0d57aab7be36651aa504dd516fadc |
| ENCFF582OJN.tabix.bed.gz | 238.41 KB | 5291bf0b45a05c90eb0e8eb11e70915a |
| ENCFF582OJN.tabix.bed.gz.dvc | 106.0 B | c3b2b0dfed38d73c379a7d7591646b82 |
| ENCFF582OJN.tabix.bed.gz.tbi | 93.87 KB | c474683d720b4b27007968e1389124da |
| ENCFF582OJN.tabix.bed.gz.tbi.dvc | 109.0 B | 8ac328f9dff76769059757169c66106f |
| genomic_resource.yaml | 3.3 KB | c232be4b1cc55d8378da756178ab70a5 |
| genomic_resource_original.yaml | 3.15 KB | 00fc6fa6fb19f6c2ed590e237143a42b |
| statistics/ |