Resource
| Id | Histone_ChIP-seq/ENCSR857LLS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR857LLS [biosample_summary="Homo sapiens iPS DF 6.9" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN160XTQ|/analyses/ENCAN160XTQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN160XTQ|/analyses/ENCAN160XTQ/} has in progress subobject document {06bfefcf-b986-4516-8eda-36a5396839d3|/documents/06bfefcf-b986-4516-8eda-36a5396839d3/} audit_not_compliant: Processed alignments file {ENCFF282WZN|/files/ENCFF282WZN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 21496938 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF826HOA|/files/ENCFF826HOA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 32235912 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR857LLS | float |
Histone_ChIP-seq_ENCSR857LLS |
Histone_ChIP-seq ENCSR857LLS [biosample_summary="Homo sapiens iPS DF 6.9" and target="H3K4me1"]
|
 |
[1.68, 13] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 18688835 | 0.58% | 84496 |
| chr1 | 2011707 | 0.81% | 8619 |
| chr2 | 1464473 | 0.60% | 6759 |
| chr3 | 1165238 | 0.59% | 5410 |
| chr4 | 711443 | 0.37% | 3514 |
| chr5 | 977265 | 0.54% | 4595 |
| chr6 | 1041718 | 0.61% | 4814 |
| chr7 | 916763 | 0.58% | 4229 |
| chr8 | 808717 | 0.56% | 3796 |
| chr9 | 885452 | 0.64% | 3968 |
| chr10 | 916422 | 0.68% | 4128 |
| chr11 | 1131153 | 0.84% | 4926 |
| chr12 | 810668 | 0.61% | 3765 |
| chr13 | 417416 | 0.36% | 2041 |
| chr14 | 606096 | 0.57% | 2727 |
| chr15 | 700420 | 0.69% | 3067 |
| chr16 | 679051 | 0.75% | 2980 |
| chr17 | 1032562 | 1.24% | 4273 |
| chr18 | 415419 | 0.52% | 1994 |
| chr19 | 614536 | 1.05% | 2639 |
| chr20 | 531628 | 0.82% | 2366 |
| chr21 | 172916 | 0.37% | 787 |
| chr22 | 467711 | 0.92% | 1964 |
| chrX | 207800 | 0.13% | 1122 |
| chrY | 2261 | <0.01% | 13 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 84496 | 110 | 2215 | 221.18 | 186 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF211VYM.bed.gz | 1.65 MB | ed6f5d08a0a51e1ddbf321cadc906daa |
| ENCFF211VYM.tabix.bed.gz | 835.59 KB | 7c8f55fbb2c8bd8f3e368353acab8170 |
| ENCFF211VYM.tabix.bed.gz.tbi | 337.3 KB | f3f3a8634060fd69732a85c1191aa84e |
| genomic_resource.yaml | 2.62 KB | b2e21dab3670ebcb9d6c0caa2c5364b6 |
| statistics/ |