| Id: | Histone_ChIP-seq/ENCSR857HWF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR857HWF [biosamplesummary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN124SSU|/analyses/ENCAN124SSU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF941TUE|/files/ENCFF941TUE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF941TUE|/files/ENCFF941TUE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.32. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR857HWF | float |
Histone_ChIP-seq_ENCSR857HWF |
Histone_ChIP-seq ENCSR857HWF [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
|
 |
[1.75, 77.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF714WHK.bed.gz | 1.1 MB | 583bb8493167cac5432251ddb9a1dd87 |
| ENCFF714WHK.bed.gz.dvc | 101.0 B | 75d8df2bb35083b86e35042cd4fd2b3b |
| ENCFF714WHK.tabix.bed.gz | 502.37 KB | 4e410461044103d6bd334dc347b72161 |
| ENCFF714WHK.tabix.bed.gz.dvc | 106.0 B | 4fc4c43a0ce5065ca114b8f062fea0b1 |
| ENCFF714WHK.tabix.bed.gz.tbi | 237.01 KB | bbb4baedf272c062abcead3659c822dc |
| ENCFF714WHK.tabix.bed.gz.tbi.dvc | 110.0 B | 8fa652b3b35bfbd8b8b30677e195199a |
| genomic_resource.yaml | 3.01 KB | ef7efa73776496593da3fe4bac6621ed |
| genomic_resource_original.yaml | 2.82 KB | e1d2c72bc2381ba3066d48d5e9812ad1 |
| statistics/ |