Resource
| Id | Histone_ChIP-seq/ENCSR854TXC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR854TXC [biosample_summary="Homo sapiens heart left ventricle tissue male adult (40 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN077VUM|/analyses/ENCAN077VUM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed unfiltered alignments file {ENCFF834TOE|/files/ENCFF834TOE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 41927173 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR854TXC | float |
Histone_ChIP-seq_ENCSR854TXC |
Histone_ChIP-seq ENCSR854TXC [biosample_summary="Homo sapiens heart left ventricle tissue male adult (40 years)" and target="H3K9me3"]
|
 |
[1.51, 26] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 46569156 | 1.45% | 38575 |
| chr1 | 3143232 | 1.26% | 2798 |
| chr2 | 3584570 | 1.48% | 3333 |
| chr3 | 2916508 | 1.47% | 2676 |
| chr4 | 3213735 | 1.69% | 2919 |
| chr5 | 3331481 | 1.84% | 2748 |
| chr6 | 2527564 | 1.48% | 2373 |
| chr7 | 2812606 | 1.77% | 2311 |
| chr8 | 2619344 | 1.80% | 2269 |
| chr9 | 1792100 | 1.29% | 1510 |
| chr10 | 2013880 | 1.51% | 1747 |
| chr11 | 2211444 | 1.64% | 1819 |
| chr12 | 2546311 | 1.91% | 1962 |
| chr13 | 1454887 | 1.27% | 1420 |
| chr14 | 1386687 | 1.30% | 1269 |
| chr15 | 1178595 | 1.16% | 983 |
| chr16 | 1288693 | 1.43% | 962 |
| chr17 | 796918 | 0.96% | 685 |
| chr18 | 1069665 | 1.33% | 979 |
| chr19 | 4446221 | 7.59% | 1715 |
| chr20 | 755097 | 1.17% | 700 |
| chr21 | 633296 | 1.36% | 565 |
| chr22 | 451182 | 0.89% | 424 |
| chrX | 356613 | 0.23% | 367 |
| chrY | 38527 | 0.07% | 41 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 38575 | 250 | 62875 | 1207.24 | 905 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF680EHX.bed.gz | 762.63 KB | 47f4ef31181ed2ae5ad99bcffca2df64 |
| ENCFF680EHX.tabix.bed.gz | 393.76 KB | ccbaa31cc84c0abd159e7cbddbb740df |
| ENCFF680EHX.tabix.bed.gz.tbi | 220.02 KB | f5f7ea22af31a9e285dbf29dcfae8f44 |
| genomic_resource.yaml | 2.01 KB | acab77fea88f392bfbe1fc08556f1a9b |
| statistics/ |