Resource

Id Histone_ChIP-seq/ENCSR853XJKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR853XJK [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR853XJK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001606/
  • biosample_summary: Homo sapiens foreskin keratinocyte male newborn
  • date_created: 2015-09-15T20:26:34.938858+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR853XJK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR853XJK float

Histone_ChIP-seq_ENCSR853XJK
Histone_ChIP-seq ENCSR853XJK [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR853XJK [1.72, 53.3]
n
65,790,062
mean
7.31
sd
6.29

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 657900622.04% 97737
chr1 6047797 2.43% 9270
chr2 4930909 2.04% 7528
chr3 3397553 1.71% 5518
chr4 2687332 1.41% 3977
chr5 3386584 1.87% 5057
chr6 3614120 2.12% 5312
chr7 3430139 2.15% 5119
chr8 2657141 1.83% 4141
chr9 3029295 2.19% 4402
chr10 3608975 2.70% 5500
chr11 3871794 2.87% 5781
chr12 2875545 2.16% 4320
chr13 1623446 1.42% 2409
chr14 2281288 2.13% 3423
chr15 2394379 2.35% 3617
chr16 2403669 2.66% 3572
chr17 3898439 4.68% 4990
chr18 1209137 1.50% 1952
chr19 2393816 4.08% 3090
chr20 3142187 4.88% 4489
chr21 774399 1.66% 1174
chr22 1413700 2.78% 2209
chrX 709804 0.45% 874
chrY 8614 0.02% 13
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 97737 185 42365 673.13 393
global segment-length histogram

Files

Filename Size md5
ENCFF797AIO.bed.gz 2.01 MB 7fe5c5cecbfe5e7d375af35d43334c7e
ENCFF797AIO.tabix.bed.gz 997.72 KB 396237bb7235b76a9abb94890eaa1f53
ENCFF797AIO.tabix.bed.gz.tbi 259.45 KB 28fb2e948c9d1f3aa62a489d10789667
genomic_resource.yaml 1.96 KB a34448bca43064119d3b42efff6049d2
statistics/