Resource

Id Histone_ChIP-seq/ENCSR853JJZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR853JJZ [biosample_summary="Homo sapiens chorionic villus tissue female embryo (40 weeks)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR853JJZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue female embryo (40 weeks)
  • date_created: 2017-03-22T16:16:46.847971+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR853JJZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (40 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR853JJZ float

Histone_ChIP-seq_ENCSR853JJZ
Histone_ChIP-seq ENCSR853JJZ [biosample_summary="Homo sapiens chorionic villus tissue female embryo (40 weeks)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR853JJZ [1.67, 43.1]
n
27,448,372
mean
4.61
sd
1.37

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 274483720.85% 63634
chr1 2719684 1.09% 6207
chr2 1644379 0.68% 3880
chr3 633830 0.32% 1703
chr4 1128045 0.59% 2212
chr5 1110186 0.61% 2506
chr6 947012 0.55% 2371
chr7 1357646 0.85% 2992
chr8 941316 0.65% 2256
chr9 1298580 0.94% 2781
chr10 1519799 1.14% 3423
chr11 1461441 1.08% 3350
chr12 1066590 0.80% 2427
chr13 499810 0.44% 1160
chr14 658955 0.62% 1516
chr15 562102 0.55% 1505
chr16 1262472 1.40% 2663
chr17 1586608 1.91% 3595
chr18 423840 0.53% 1121
chr19 1750577 2.99% 3890
chr20 1492279 2.32% 3128
chr21 436701 0.93% 1021
chr22 1139604 2.24% 2494
chrX 1806374 1.16% 5431
chrY 542 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63634 120 10145 431.35 320
global segment-length histogram

Files

Filename Size md5
ENCFF801WFV.bed.gz 1.16 MB f86442c3439e529b957d2e7ca6c82d64
ENCFF801WFV.tabix.bed.gz 608.72 KB 724eea899cae0243c7d6bf61240fe58e
ENCFF801WFV.tabix.bed.gz.tbi 170.71 KB a45918834f19b3db8ac742f3ca1055f5
genomic_resource.yaml 2.02 KB cb7ecaf60da8df0040fce761ccd9e2a5
statistics/