Resource
| Id | Histone_ChIP-seq/ENCSR850QKN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR850QKN [biosample_summary="Homo sapiens OCI-LY7" and target="H3K4me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN213WVU|/analyses/ENCAN213WVU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN213WVU|/analyses/ENCAN213WVU/} has in progress subobject document {c6b239bb-3e2e-42fd-beef-324cd5062361|/documents/c6b239bb-3e2e-42fd-beef-324cd5062361/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF958HVP|/files/ENCFF958HVP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF958HVP|/files/ENCFF958HVP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.21. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR850QKN | float |
Histone_ChIP-seq_ENCSR850QKN |
Histone_ChIP-seq ENCSR850QKN [biosample_summary="Homo sapiens OCI-LY7" and target="H3K4me2"]
|
 |
[1.77, 37.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 102436558 | 3.18% | 64437 |
| chr1 | 9785737 | 3.93% | 6134 |
| chr2 | 7830060 | 3.23% | 4900 |
| chr3 | 6610258 | 3.33% | 4098 |
| chr4 | 4010618 | 2.11% | 2543 |
| chr5 | 4918378 | 2.71% | 2995 |
| chr6 | 6297183 | 3.69% | 3797 |
| chr7 | 4892175 | 3.07% | 3227 |
| chr8 | 4117585 | 2.84% | 2595 |
| chr9 | 4162434 | 3.01% | 2573 |
| chr10 | 4381501 | 3.27% | 2722 |
| chr11 | 4947928 | 3.66% | 2961 |
| chr12 | 5593072 | 4.20% | 3446 |
| chr13 | 2361560 | 2.06% | 1461 |
| chr14 | 3566020 | 3.33% | 2195 |
| chr15 | 3331787 | 3.27% | 2140 |
| chr16 | 3933165 | 4.35% | 2497 |
| chr17 | 5359583 | 6.44% | 3417 |
| chr18 | 1875006 | 2.33% | 1265 |
| chr19 | 4811748 | 8.21% | 3197 |
| chr20 | 2879208 | 4.47% | 1904 |
| chr21 | 985923 | 2.11% | 674 |
| chr22 | 2679958 | 5.27% | 1635 |
| chrX | 2904266 | 1.86% | 1926 |
| chrY | 201405 | 0.35% | 135 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 64437 | 198 | 31775 | 1589.72 | 1074 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF118OCK.bed.gz | 1.73 MB | 6a88bf603b44f6e1279f16e3773200d9 |
| ENCFF118OCK.tabix.bed.gz | 735.83 KB | 93c6d50429d33553bd8a2998c304deed |
| ENCFF118OCK.tabix.bed.gz.tbi | 215.7 KB | ae7dfc53110319b8ff8f7c21934f27ef |
| genomic_resource.yaml | 2.91 KB | 681dfabd69c52ac67acaafa7565a82de |
| statistics/ |