Histone_ChIP-seq_ENCSR850QKN
Histone_ChIP-seq ENCSR850QKN [biosample_summary="Homo sapiens OCI-LY7" and target="H3K4me2"]
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| Id: | Histone_ChIP-seq/ENCSR850QKN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR850QKN [biosamplesummary="Homo sapiens OCI-LY7" and target="H3K4me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN213WVU|/analyses/ENCAN213WVU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN213WVU|/analyses/ENCAN213WVU/} has in progress subobject document {c6b239bb-3e2e-42fd-beef-324cd5062361|/documents/c6b239bb-3e2e-42fd-beef-324cd5062361/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF958HVP|/files/ENCFF958HVP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF958HVP|/files/ENCFF958HVP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR850QKN | float |
Histone_ChIP-seq_ENCSR850QKN |
Histone_ChIP-seq ENCSR850QKN [biosample_summary="Homo sapiens OCI-LY7" and target="H3K4me2"]
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[1.77, 37.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF118OCK.bed.gz | 1.73 MB | 6a88bf603b44f6e1279f16e3773200d9 |
| ENCFF118OCK.bed.gz.dvc | 101.0 B | 397a983b59d07580180fde635fe449f0 |
| ENCFF118OCK.tabix.bed.gz | 735.83 KB | 93c6d50429d33553bd8a2998c304deed |
| ENCFF118OCK.tabix.bed.gz.dvc | 106.0 B | 2321da37f8b2d2ab766735b122ab8665 |
| ENCFF118OCK.tabix.bed.gz.tbi | 215.7 KB | ae7dfc53110319b8ff8f7c21934f27ef |
| ENCFF118OCK.tabix.bed.gz.tbi.dvc | 110.0 B | 94abd8eb5cd8ebe05018c44396671c8d |
| genomic_resource.yaml | 2.91 KB | 681dfabd69c52ac67acaafa7565a82de |
| genomic_resource_original.yaml | 2.8 KB | 10528296ad74cde593cc583ab988d8bd |
| statistics/ |