Histone_ChIP-seq_ENCSR848EZM
Histone_ChIP-seq ENCSR848EZM [biosample_summary="Homo sapiens iPS-15b" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR848EZM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR848EZM [biosamplesummary="Homo sapiens iPS-15b" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN799PYH|/analyses/ENCAN799PYH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF734WKE|/files/ENCFF734WKE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16697949 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF734WKE|/files/ENCFF734WKE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF734WKE|/files/ENCFF734WKE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.32. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR848EZM | float |
Histone_ChIP-seq_ENCSR848EZM |
Histone_ChIP-seq ENCSR848EZM [biosample_summary="Homo sapiens iPS-15b" and target="H3K9ac"]
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[1.93, 49.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF510PCM.bed.gz | 700.54 KB | b6437264e2d164a482577fb871f0ba05 |
| ENCFF510PCM.bed.gz.dvc | 100.0 B | fadd1b3cd66d273a2cb54f56c159b989 |
| ENCFF510PCM.tabix.bed.gz | 345.34 KB | 48af276aa3dde196d4aca00fa89116eb |
| ENCFF510PCM.tabix.bed.gz.dvc | 106.0 B | 7e844f30baaaa748d11ba090856a7f04 |
| ENCFF510PCM.tabix.bed.gz.tbi | 168.12 KB | d22087f20f4428d0fe2720ab64f5561e |
| ENCFF510PCM.tabix.bed.gz.tbi.dvc | 110.0 B | 9b776fe7e488829748c2f78f9f834059 |
| genomic_resource.yaml | 3.16 KB | 4f65b7f6ee74969eb56ce924b300a6d2 |
| genomic_resource_original.yaml | 3.05 KB | b1dd05ce3dbd8d4c1b903ccb3b0e0335 |
| statistics/ |