Histone_ChIP-seq_ENCSR843VHQ
Histone_ChIP-seq ENCSR843VHQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR843VHQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR843VHQ [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN204ZIL|/analyses/ENCAN204ZIL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF667SEX|/files/ENCFF667SEX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF667SEX|/files/ENCFF667SEX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.03. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR843VHQ | float |
Histone_ChIP-seq_ENCSR843VHQ |
Histone_ChIP-seq ENCSR843VHQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K36me3"]
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[1.69, 21.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF803ZCJ.bed.gz | 2.35 MB | c1dc9102d2af7585d4f80809996292e4 |
| ENCFF803ZCJ.bed.gz.dvc | 101.0 B | a613b5439b02e6596e9f80e0d026b27f |
| ENCFF803ZCJ.tabix.bed.gz | 1.06 MB | e65e5dca0c00a8861e19bce76eb7a952 |
| ENCFF803ZCJ.tabix.bed.gz.dvc | 107.0 B | a158e78c53b69c16eaef91be14bb6eab |
| ENCFF803ZCJ.tabix.bed.gz.tbi | 159.25 KB | 80a6b7e0b28af8aec1ee06a8c6b9022f |
| ENCFF803ZCJ.tabix.bed.gz.tbi.dvc | 110.0 B | 39bfdff0d46603bad468aa7339939940 |
| genomic_resource.yaml | 2.8 KB | 04d75e516e03e8950d32326187f802af |
| genomic_resource_original.yaml | 2.65 KB | bc21162d0596d2ce398dbcac87ee5774 |
| statistics/ |