Resource
| Id | Histone_ChIP-seq/ENCSR843VHQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR843VHQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN204ZIL|/analyses/ENCAN204ZIL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF667SEX|/files/ENCFF667SEX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF667SEX|/files/ENCFF667SEX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.03. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR843VHQ | float |
Histone_ChIP-seq_ENCSR843VHQ |
Histone_ChIP-seq ENCSR843VHQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K36me3"]
|
 |
[1.69, 21.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 192818489 | 5.99% | 102875 |
| chr1 | 19026205 | 7.64% | 9729 |
| chr2 | 15701359 | 6.48% | 8685 |
| chr3 | 12757273 | 6.43% | 7194 |
| chr4 | 8385956 | 4.41% | 4974 |
| chr5 | 9899308 | 5.45% | 5266 |
| chr6 | 9250947 | 5.42% | 5235 |
| chr7 | 9096045 | 5.71% | 5387 |
| chr8 | 6991768 | 4.82% | 3982 |
| chr9 | 8082364 | 5.84% | 4405 |
| chr10 | 8949659 | 6.69% | 4901 |
| chr11 | 9171161 | 6.79% | 4658 |
| chr12 | 10631087 | 7.98% | 5227 |
| chr13 | 4593609 | 4.02% | 2833 |
| chr14 | 6863242 | 6.41% | 3409 |
| chr15 | 7377610 | 7.23% | 3816 |
| chr16 | 7497726 | 8.30% | 3546 |
| chr17 | 10029045 | 12.05% | 4802 |
| chr18 | 3445439 | 4.29% | 2096 |
| chr19 | 10076447 | 17.19% | 4258 |
| chr20 | 5226981 | 8.11% | 2588 |
| chr21 | 2101411 | 4.50% | 1041 |
| chr22 | 4418609 | 8.69% | 2162 |
| chrX | 3054543 | 1.96% | 2505 |
| chrY | 190695 | 0.33% | 176 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 102875 | 215 | 68998 | 1874.3 | 965 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF803ZCJ.bed.gz | 2.35 MB | c1dc9102d2af7585d4f80809996292e4 |
| ENCFF803ZCJ.tabix.bed.gz | 1.06 MB | e65e5dca0c00a8861e19bce76eb7a952 |
| ENCFF803ZCJ.tabix.bed.gz.tbi | 159.25 KB | 80a6b7e0b28af8aec1ee06a8c6b9022f |
| genomic_resource.yaml | 2.8 KB | 04d75e516e03e8950d32326187f802af |
| statistics/ |