Resource

Id Histone_ChIP-seq/ENCSR840VWDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR840VWD [biosample_summary="Homo sapiens transverse colon tissue female adult (53 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR840VWD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue female adult (53 years)
  • date_created: 2016-10-19T23:10:47.179137+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR840VWD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR840VWD float

Histone_ChIP-seq_ENCSR840VWD
Histone_ChIP-seq ENCSR840VWD [biosample_summary="Homo sapiens transverse colon tissue female adult (53 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR840VWD [1.31, 7.28]
n
59,851,887
mean
2.85
sd
1.12

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 598518871.86% 19074
chr1 5078259 2.04% 1510
chr1_KI270712v1_random 5433 3.09% 3
chr1_KI270713v1_random 5244 12.87% 2
chr2 2990583 1.23% 815
chr3 1752919 0.88% 491
chr4 1665791 0.88% 407
chr5 2384902 1.31% 598
chr6 2960108 1.73% 747
chr7 2192515 1.38% 594
chr8 1892182 1.30% 530
chr9 2237027 1.62% 591
chr10 2276793 1.70% 603
chr11 2562151 1.90% 772
chr12 2322126 1.74% 660
chr13 1086669 0.95% 307
chr14 1454200 1.36% 423
chr15 1451858 1.42% 454
chr16 1751013 1.94% 547
chr17 3229296 3.88% 942
chr17_GL000205v2_random 57806 31.15% 8
chr18 750207 0.93% 223
chr19 3274730 5.59% 907
chr20 2337106 3.63% 701
chr21 636036 1.36% 201
chr22 1474939 2.90% 510
chr22_KI270733v1_random 1700 0.95% 2
chrUn_GL000195v1 1139 0.62% 1
chrUn_GL000219v1 31450 17.55% 13
chrUn_GL000224v1 5329 2.97% 3
chrX 11982376 7.68% 5509
3336 contigs with no values (185180562 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 19074 745 151952 3137.88 2032
global segment-length histogram

Files

Filename Size md5
ENCFF889PMP.bed.gz 419.75 KB d64a69a351056a64d4d77b584a0aae0f
ENCFF889PMP.tabix.bed.gz 207.62 KB bd95a3d743fbfdcfa2cb25f4b7f701c4
ENCFF889PMP.tabix.bed.gz.tbi 89.89 KB 63f1a2b0dbdb626da2560f88bf0061ed
genomic_resource.yaml 2.0 KB a893ae540a6911b94c5f2904acbd6707
statistics/