Resource

Id Histone_ChIP-seq/ENCSR840KVXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR840KVX [biosample_summary="Homo sapiens caudate nucleus tissue male adult (81 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR840KVX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001873/
  • biosample_summary: Homo sapiens caudate nucleus tissue male adult (81 years)
  • date_created: 2015-09-15T19:52:05.526656+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR840KVX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (81 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR840KVX float

Histone_ChIP-seq_ENCSR840KVX
Histone_ChIP-seq ENCSR840KVX [biosample_summary="Homo sapiens caudate nucleus tissue male adult (81 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR840KVX [1.92, 66.2]
n
56,282,215
mean
20.5
sd
13.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 562822151.75% 46142
chr1 5381149 2.16% 4290
chr2 3917372 1.62% 3297
chr3 3305243 1.67% 2618
chr4 2373696 1.25% 1967
chr5 2868236 1.58% 2292
chr6 3346192 1.96% 2644
chr7 2730900 1.71% 2342
chr8 2217290 1.53% 1850
chr9 2333943 1.69% 1970
chr10 2505840 1.87% 2099
chr11 2973847 2.20% 2302
chr12 2907486 2.18% 2254
chr13 1329654 1.16% 1143
chr14 1852363 1.73% 1480
chr15 1767591 1.73% 1462
chr16 2124356 2.35% 1780
chr17 2994902 3.60% 2416
chr18 1096872 1.36% 935
chr19 3429958 5.85% 2896
chr20 1430077 2.22% 1194
chr21 581068 1.24% 554
chr22 1164619 2.29% 988
chrX 1592518 1.02% 1320
chrY 57043 0.10% 49
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46142 220 15799 1219.76 858
global segment-length histogram

Files

Filename Size md5
ENCFF753BHM.bed.gz 1.03 MB 62a6ee1b0f5e4dab8dd532c1884f9ca1
ENCFF753BHM.tabix.bed.gz 489.94 KB fad764aa07ed6b8ca5f93039c66d4598
ENCFF753BHM.tabix.bed.gz.tbi 231.13 KB 8eab5d1d377d0ed44bf3f51c5c689c6d
genomic_resource.yaml 2.0 KB 453f220a1c9c36ad645757590635bb75
statistics/