Histone_ChIP-seq_ENCSR839GXY
Histone_ChIP-seq ENCSR839GXY [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR839GXY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR839GXY [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN915NQS|/analyses/ENCAN915NQS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF780SVP|/files/ENCFF780SVP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF780SVP|/files/ENCFF780SVP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.29. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR839GXY | float |
Histone_ChIP-seq_ENCSR839GXY |
Histone_ChIP-seq ENCSR839GXY [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K27ac"]
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[1.81, 68.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF521HKS.bed.gz | 1.95 MB | 6c358d366c7ccb0955799bd8dc41a75a |
| ENCFF521HKS.bed.gz.dvc | 101.0 B | fc5f13977f7eb2f7101c0410521e93f9 |
| ENCFF521HKS.tabix.bed.gz | 875.61 KB | 977d8db193954a29c23fe6087ca7c448 |
| ENCFF521HKS.tabix.bed.gz.dvc | 106.0 B | 6cd60c9620c34ec3bef9c7209644b312 |
| ENCFF521HKS.tabix.bed.gz.tbi | 252.47 KB | b309c850b0c63e2b6988d4cf381845aa |
| ENCFF521HKS.tabix.bed.gz.tbi.dvc | 110.0 B | ff54cc43788af9835adb1382c9d69b26 |
| genomic_resource.yaml | 2.79 KB | b79e8c580cc69c860aa2380915cb1eb2 |
| genomic_resource_original.yaml | 2.65 KB | 5bc7735680f655e3d898ef853722bd21 |
| statistics/ |