Resource
| Id | Histone_ChIP-seq/ENCSR837SUQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR837SUQ [biosample_summary="Homo sapiens Loucy" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN970RPZ|/analyses/ENCAN970RPZ/} has in progress subobject document {e6b627b0-c5ae-4724-b008-eab3e0e7d74b|/documents/e6b627b0-c5ae-4724-b008-eab3e0e7d74b/} audit_internal_action: Released analysis {ENCAN970RPZ|/analyses/ENCAN970RPZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF765KXV|/files/ENCFF765KXV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 25714064 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF949KBQ|/files/ENCFF949KBQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15901773 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR837SUQ | float |
Histone_ChIP-seq_ENCSR837SUQ |
Histone_ChIP-seq ENCSR837SUQ [biosample_summary="Homo sapiens Loucy" and target="H3K36me3"]
|
 |
[1.85, 21.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 130130614 | 4.04% | 113212 |
| chr1 | 13295079 | 5.34% | 11073 |
| chr2 | 10990242 | 4.54% | 9573 |
| chr3 | 8965872 | 4.52% | 7919 |
| chr4 | 5522474 | 2.90% | 5132 |
| chr5 | 5759273 | 3.17% | 5238 |
| chr6 | 6262171 | 3.67% | 5836 |
| chr7 | 6195475 | 3.89% | 5496 |
| chr8 | 4766516 | 3.28% | 4414 |
| chr9 | 5636740 | 4.07% | 4900 |
| chr10 | 6252049 | 4.67% | 5440 |
| chr11 | 6316985 | 4.68% | 5104 |
| chr12 | 7049087 | 5.29% | 6019 |
| chr13 | 3210872 | 2.81% | 2907 |
| chr14 | 4944381 | 4.62% | 4424 |
| chr15 | 5175204 | 5.07% | 4525 |
| chr16 | 3880821 | 4.30% | 3434 |
| chr17 | 7256311 | 8.72% | 6143 |
| chr18 | 2463789 | 3.07% | 2333 |
| chr19 | 5022243 | 8.57% | 4010 |
| chr20 | 3803178 | 5.90% | 3094 |
| chr21 | 1630792 | 3.49% | 1311 |
| chr22 | 3276307 | 6.45% | 2445 |
| chrX | 2454753 | 1.57% | 2442 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 113212 | 185 | 32613 | 1149.44 | 749 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF792HIB.bed.gz | 2.5 MB | 936aa4d63c522af23feb8a08617669aa |
| ENCFF792HIB.tabix.bed.gz | 1.14 MB | 825aa45b859db2ac4b2dc3a77d43d57b |
| ENCFF792HIB.tabix.bed.gz.tbi | 143.58 KB | 56b909a5361f7bc9ede568e779606168 |
| genomic_resource.yaml | 2.61 KB | 56bb2a9ca7cfd30a3197015fb728a9d7 |
| statistics/ |