Resource
| Id | Histone_ChIP-seq/ENCSR837HEG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR837HEG [biosample_summary="Homo sapiens psoas muscle tissue female adult (41 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN016STK|/analyses/ENCAN016STK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF716ZIZ|/files/ENCFF716ZIZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 28819840 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR837HEG | float |
Histone_ChIP-seq_ENCSR837HEG |
Histone_ChIP-seq ENCSR837HEG [biosample_summary="Homo sapiens psoas muscle tissue female adult (41 years)" and target="H3K27me3"]
|
 |
[1.86, 14.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 58639790 | 1.82% | 62664 |
| chr1 | 5471995 | 2.20% | 5811 |
| chr2 | 2896411 | 1.20% | 2941 |
| chr3 | 1600100 | 0.81% | 1668 |
| chr4 | 1817156 | 0.96% | 1652 |
| chr5 | 2458563 | 1.35% | 2338 |
| chr6 | 2931814 | 1.72% | 2684 |
| chr7 | 2382991 | 1.50% | 2259 |
| chr8 | 2321591 | 1.60% | 2354 |
| chr9 | 2686880 | 1.94% | 2613 |
| chr10 | 2532266 | 1.89% | 2577 |
| chr11 | 2868438 | 2.12% | 3174 |
| chr12 | 2465828 | 1.85% | 2580 |
| chr13 | 1157014 | 1.01% | 1131 |
| chr14 | 1538391 | 1.44% | 1560 |
| chr15 | 1519934 | 1.49% | 1616 |
| chr16 | 2033470 | 2.25% | 2051 |
| chr17 | 3619782 | 4.35% | 3533 |
| chr18 | 1006875 | 1.25% | 1097 |
| chr19 | 3057801 | 5.22% | 2948 |
| chr20 | 2386203 | 3.70% | 2427 |
| chr21 | 986895 | 2.11% | 1063 |
| chr22 | 2219549 | 4.37% | 2519 |
| chrX | 6679843 | 4.28% | 10068 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 62664 | 200 | 42443 | 935.78 | 624 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF270WAT.bed.gz | 1.07 MB | a3d59362ee8077d2be3b3b56f1492342 |
| ENCFF270WAT.tabix.bed.gz | 582.03 KB | f9990e165fb7e518164cf73071a049c4 |
| ENCFF270WAT.tabix.bed.gz.tbi | 161.44 KB | 551c04619fb90adb7a17ca16f4ab3436 |
| genomic_resource.yaml | 2.01 KB | 0016dde57bf44d2ec0d1143e5246c3f9 |
| statistics/ |