Resource
| Id | Histone_ChIP-seq/ENCSR836KDL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR836KDL [biosample_summary="Homo sapiens chorionic villus tissue female embryo (40 weeks)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (40 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN174CDI|/analyses/ENCAN174CDI/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF346SFA|/files/ENCFF346SFA/} processed by ChIP-seq ENCODE3 hg19 pipeline has 34764284 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR836KDL | float |
Histone_ChIP-seq_ENCSR836KDL |
Histone_ChIP-seq ENCSR836KDL [biosample_summary="Homo sapiens chorionic villus tissue female embryo (40 weeks)" and target="H3K36me3"]
|
 |
[1.44, 32.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 64095397 | 1.99% | 104981 |
| chr1 | 6360465 | 2.55% | 10454 |
| chr2 | 3996319 | 1.65% | 7559 |
| chr3 | 3447664 | 1.74% | 6185 |
| chr4 | 1918584 | 1.01% | 3663 |
| chr5 | 2875595 | 1.58% | 5161 |
| chr6 | 2295505 | 1.34% | 4198 |
| chr7 | 2978205 | 1.87% | 4990 |
| chr8 | 1711847 | 1.18% | 3222 |
| chr9 | 2889596 | 2.09% | 4533 |
| chr10 | 2508556 | 1.87% | 4581 |
| chr11 | 3616651 | 2.68% | 5524 |
| chr12 | 3653834 | 2.74% | 5751 |
| chr13 | 884098 | 0.77% | 1853 |
| chr14 | 2218953 | 2.07% | 3905 |
| chr15 | 2144914 | 2.10% | 3901 |
| chr16 | 3733546 | 4.13% | 5234 |
| chr17 | 4655174 | 5.59% | 6708 |
| chr18 | 734610 | 0.91% | 1488 |
| chr19 | 5620523 | 9.59% | 7232 |
| chr20 | 2199255 | 3.41% | 3289 |
| chr21 | 795375 | 1.70% | 1318 |
| chr22 | 2220006 | 4.37% | 2956 |
| chrX | 636122 | 0.41% | 1276 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 104981 | 125 | 15752 | 610.54 | 427 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF473HYH.bed.gz | 1.91 MB | c96770e9413f50b1632c27a027f0c8f3 |
| ENCFF473HYH.tabix.bed.gz | 994.99 KB | c3a526e06cd0720b6240916485c03d0f |
| ENCFF473HYH.tabix.bed.gz.tbi | 164.02 KB | 2273ee093fbdcef848af5492e58643d7 |
| genomic_resource.yaml | 2.02 KB | 7ed59628d42955d0c1638dab2f0155f7 |
| statistics/ |