Histone_ChIP-seq_ENCSR835YBD
Histone_ChIP-seq ENCSR835YBD [biosample_summary="Homo sapiens KMS-11" and target="H3K36me3"]
×
| Id: | Histone_ChIP-seq/ENCSR835YBD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR835YBD [biosamplesummary="Homo sapiens KMS-11" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN637GVQ|/analyses/ENCAN637GVQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN637GVQ|/analyses/ENCAN637GVQ/} has in progress subobject document {93ecfd7f-a7b0-473f-962a-c04dae582175|/documents/93ecfd7f-a7b0-473f-962a-c04dae582175/} audit_not_compliant: Processed alignments file {ENCFF786COH|/files/ENCFF786COH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 22092626 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF125PEN|/files/ENCFF125PEN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19092469 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF125PEN|/files/ENCFF125PEN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF125PEN|/files/ENCFF125PEN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.34. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR835YBD | float |
Histone_ChIP-seq_ENCSR835YBD |
Histone_ChIP-seq ENCSR835YBD [biosample_summary="Homo sapiens KMS-11" and target="H3K36me3"]
|
|
[1.79, 6.59] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF935NGI.bed.gz | 358.18 KB | 7d2d8900ad6e2d9bf5f992c6684924f1 |
| ENCFF935NGI.bed.gz.dvc | 100.0 B | ec5c12c38366202a7bc98e8f0eed712f |
| ENCFF935NGI.tabix.bed.gz | 172.74 KB | 3b1247449196dc8680acb97d9abb12ea |
| ENCFF935NGI.tabix.bed.gz.dvc | 106.0 B | 42d2594ad685c385c8d02d23d2ae7691 |
| ENCFF935NGI.tabix.bed.gz.tbi | 66.99 KB | 55ca7528d549a5e93d05f11d5780c30a |
| ENCFF935NGI.tabix.bed.gz.tbi.dvc | 109.0 B | 5bf0e66fba190c0702293702fac8a074 |
| genomic_resource.yaml | 3.93 KB | eb68abf247fab458a667cefcc386d353 |
| genomic_resource_original.yaml | 3.82 KB | 3fc1c0ee3e1f3aedbb2ad8f79f49dc98 |
| statistics/ |