Resource
| Id | Histone_ChIP-seq/ENCSR831JSP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR831JSP [biosample_summary="Homo sapiens IMR-90" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN354IXC|/analyses/ENCAN354IXC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF064SDE|/files/ENCFF064SDE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 23680245 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF307BHB|/files/ENCFF307BHB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 20081696 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR831JSP | float |
Histone_ChIP-seq_ENCSR831JSP |
Histone_ChIP-seq ENCSR831JSP [biosample_summary="Homo sapiens IMR-90" and target="H3K4me1"]
|
 |
[1.54, 14] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 58863990 | 1.83% | 181955 |
| chr1 | 5451400 | 2.19% | 16620 |
| chr2 | 5363236 | 2.21% | 16684 |
| chr3 | 3768799 | 1.90% | 12069 |
| chr4 | 2392642 | 1.26% | 8376 |
| chr5 | 3359337 | 1.85% | 10721 |
| chr6 | 3281919 | 1.92% | 10966 |
| chr7 | 2687105 | 1.69% | 8704 |
| chr8 | 2799890 | 1.93% | 8942 |
| chr9 | 2870501 | 2.07% | 8389 |
| chr10 | 2958549 | 2.21% | 9001 |
| chr11 | 3358423 | 2.49% | 10064 |
| chr12 | 2717813 | 2.04% | 8590 |
| chr13 | 1509270 | 1.32% | 4989 |
| chr14 | 1921251 | 1.79% | 5839 |
| chr15 | 2346152 | 2.30% | 7103 |
| chr16 | 2040311 | 2.26% | 5647 |
| chr17 | 2920459 | 3.51% | 7966 |
| chr18 | 1297857 | 1.61% | 4323 |
| chr19 | 1479317 | 2.52% | 4019 |
| chr20 | 1615456 | 2.51% | 4805 |
| chr21 | 779812 | 1.67% | 2349 |
| chr22 | 1376844 | 2.71% | 3657 |
| chrX | 567647 | 0.36% | 2132 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 181955 | 140 | 4671 | 323.51 | 255 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF830JTY.bed.gz | 4.12 MB | 6db8b258b4bf54bf7a4a28f16761af9c |
| ENCFF830JTY.tabix.bed.gz | 1.83 MB | c9fbd15ebda2d15db7a499ee3b3f6cb8 |
| ENCFF830JTY.tabix.bed.gz.tbi | 393.36 KB | 59a5afd7bd74413f1a004506c88ececc |
| genomic_resource.yaml | 2.37 KB | 97fdce06521e0757953ae27bfe613c8f |
| statistics/ |