Resource
| Id | Histone_ChIP-seq/ENCSR831EDZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR831EDZ [biosample_summary="Homo sapiens spleen tissue female adult (51 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (51 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN977DMJ|/analyses/ENCAN977DMJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF514MUZ|/files/ENCFF514MUZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 43684335 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR831EDZ | float |
Histone_ChIP-seq_ENCSR831EDZ |
Histone_ChIP-seq ENCSR831EDZ [biosample_summary="Homo sapiens spleen tissue female adult (51 years)" and target="H3K4me1"]
|
 |
[1.35, 11.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 156663202 | 4.87% | 119225 |
| chr1 | 15512883 | 6.23% | 11604 |
| chr1_KI270712v1_random | 924 | 0.52% | 2 |
| chr2 | 12349355 | 5.10% | 9360 |
| chr3 | 10247667 | 5.17% | 8143 |
| chr4 | 5905493 | 3.10% | 4890 |
| chr5 | 7798099 | 4.30% | 6051 |
| chr6 | 8960076 | 5.25% | 7085 |
| chr7 | 7466130 | 4.69% | 5999 |
| chr8 | 6471382 | 4.46% | 5131 |
| chr9 | 6631275 | 4.79% | 5022 |
| chr10 | 7813753 | 5.84% | 5889 |
| chr11 | 8498258 | 6.29% | 6140 |
| chr12 | 7924038 | 5.95% | 5969 |
| chr13 | 3508203 | 3.07% | 2812 |
| chr14 | 5590565 | 5.22% | 4172 |
| chr15 | 5653213 | 5.54% | 4164 |
| chr16 | 5825699 | 6.45% | 4116 |
| chr17 | 8708811 | 10.46% | 6124 |
| chr17_GL000205v2_random | 4152 | 2.24% | 3 |
| chr18 | 2836754 | 3.53% | 2363 |
| chr19 | 6643788 | 11.33% | 4741 |
| chr20 | 4594229 | 7.13% | 3346 |
| chr21 | 1793467 | 3.84% | 1402 |
| chr22 | 4009078 | 7.89% | 2849 |
| chrUn_GL000195v1 | 495 | 0.27% | 1 |
| chrUn_GL000219v1 | 8315 | 4.64% | 10 |
| chrUn_KI270438v1 | 376 | 0.33% | 1 |
| chrUn_KI270467v1 | 1251 | 31.91% | 2 |
| chrX | 1905473 | 1.22% | 1834 |
| 3337 contigs with no values (185464347 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 119225 | 225 | 35950 | 1314.01 | 923 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF879DBY.bed.gz | 2.75 MB | 96cfc7fa76b3414d89cbc75cd69f0a7e |
| ENCFF879DBY.tabix.bed.gz | 1.24 MB | 25d00b309ec5e7bd1106d767ba99acd4 |
| ENCFF879DBY.tabix.bed.gz.tbi | 293.74 KB | 5e31f013a7ea1434672c2c424fc1fcb4 |
| genomic_resource.yaml | 1.97 KB | 767a564df91fb690891389499865b77a |
| statistics/ |