Resource

Id Histone_ChIP-seq/ENCSR829NJEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR829NJE [biosample_summary="Homo sapiens brain tissue male embryo (122 days)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR829NJE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000955/
  • biosample_summary: Homo sapiens brain tissue male embryo (122 days)
  • date_created: 2015-09-15T19:51:53.192196+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR829NJE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (122 days)
  • status: released
  • submitter_comment: 10/27/17: Control biosample.summary does not match Experiment (former control: ENCSR603VTC).
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR829NJE float

Histone_ChIP-seq_ENCSR829NJE
Histone_ChIP-seq ENCSR829NJE [biosample_summary="Homo sapiens brain tissue male embryo (122 days)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR829NJE [1.9, 22.8]
n
3,794,034
mean
5.54
sd
1.94

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 37940340.12% 13147
chr1 394880 0.16% 1304
chr2 288107 0.12% 961
chr3 251343 0.13% 834
chr4 189914 0.10% 655
chr5 203579 0.11% 691
chr6 281772 0.16% 940
chr7 181954 0.11% 659
chr8 129767 0.09% 466
chr9 135349 0.10% 500
chr10 161710 0.12% 557
chr11 198172 0.15% 681
chr12 223403 0.17% 762
chr13 93710 0.08% 333
chr14 136508 0.13% 455
chr15 127683 0.13% 430
chr16 99356 0.11% 368
chr17 182294 0.22% 647
chr18 66509 0.08% 243
chr19 216382 0.37% 800
chr20 77401 0.12% 280
chr21 47990 0.10% 177
chr22 53209 0.10% 191
chrX 48958 0.03% 201
chrY 4084 0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 13147 135 3097 288.59 241
global segment-length histogram

Files

Filename Size md5
ENCFF160KGF.bed.gz 236.84 KB 576b48929ab4f5c5f0ecf3b46bcb8c80
ENCFF160KGF.tabix.bed.gz 126.26 KB 2bdca67eb3147d0a94ad997842a9cc71
ENCFF160KGF.tabix.bed.gz.tbi 82.31 KB 2c6f6508d66b3e231889b2230a735e13
genomic_resource.yaml 2.29 KB 463e39bdfce24e9605c2687d32964998
statistics/