Histone_ChIP-seq_ENCSR826UTD
Histone_ChIP-seq ENCSR826UTD [biosample_summary="Homo sapiens PC-3" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR826UTD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR826UTD [biosamplesummary="Homo sapiens PC-3" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN045NDM|/analyses/ENCAN045NDM/} has in progress subobject document {cf98939a-75b4-4530-9380-00be39581529|/documents/cf98939a-75b4-4530-9380-00be39581529/} audit_internal_action: Released analysis {ENCAN045NDM|/analyses/ENCAN045NDM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF092ZKC|/files/ENCFF092ZKC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF951SHC|/files/ENCFF951SHC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF951SHC|/files/ENCFF951SHC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR826UTD | float |
Histone_ChIP-seq_ENCSR826UTD |
Histone_ChIP-seq ENCSR826UTD [biosample_summary="Homo sapiens PC-3" and target="H3K27ac"]
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[1.54, 90.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF204GCA.bed.gz | 2.14 MB | 5b3bbc474f45e290283c1181c6c4769e |
| ENCFF204GCA.bed.gz.dvc | 101.0 B | dbb5a6d26e96faf5197469ae70e99fc5 |
| ENCFF204GCA.tabix.bed.gz | 894.82 KB | 1c2fcfef08341cbcb60c232b9b95738c |
| ENCFF204GCA.tabix.bed.gz.dvc | 106.0 B | f1e3a29f9beb3b27e4e2c5dca5a22551 |
| ENCFF204GCA.tabix.bed.gz.tbi | 287.52 KB | e3d1c68ac33e58f44f2d3242bee87727 |
| ENCFF204GCA.tabix.bed.gz.tbi.dvc | 110.0 B | ac68a544568f0e1ea752611da8a8780a |
| genomic_resource.yaml | 3.57 KB | a95fea1d8d61d18a71e2e47c20fbe3b4 |
| genomic_resource_original.yaml | 3.47 KB | ba1db653dddcecac120efd980275f36e |
| statistics/ |