Histone_ChIP-seq_ENCSR826MTK
Histone_ChIP-seq ENCSR826MTK [biosample_summary="Homo sapiens spleen tissue female adult (51 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR826MTK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR826MTK [biosamplesummary="Homo sapiens spleen tissue female adult (51 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (51 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN401MOG|/analyses/ENCAN401MOG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF581DMY|/files/ENCFF581DMY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF581DMY|/files/ENCFF581DMY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.95. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR826MTK | float |
Histone_ChIP-seq_ENCSR826MTK |
Histone_ChIP-seq ENCSR826MTK [biosample_summary="Homo sapiens spleen tissue female adult (51 years)" and target="H3K27me3"]
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[1.16, 8.86] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF153IDC.bed.gz | 501.67 KB | 3ac0c5d18d1585f419cc20bc3f65f16c |
| ENCFF153IDC.bed.gz.dvc | 100.0 B | 910d3f396692d3f9d06f0229041121f6 |
| ENCFF153IDC.tabix.bed.gz | 258.12 KB | d224b331dd12377fabb6183e7d829d44 |
| ENCFF153IDC.tabix.bed.gz.dvc | 106.0 B | c7051f809d0d7e6aebca4c3d99b51455 |
| ENCFF153IDC.tabix.bed.gz.tbi | 112.0 KB | 529da8f53f53ddb64e35c61b18ef6fe0 |
| ENCFF153IDC.tabix.bed.gz.tbi.dvc | 110.0 B | 716906c52529a19f6eb011fe2a701f8e |
| genomic_resource.yaml | 2.75 KB | 0f457b21d5ffb39474f314267937fe3d |
| genomic_resource_original.yaml | 2.61 KB | 0c8a1611af726837e5300336a11416aa |
| statistics/ |