Resource
| Id | Histone_ChIP-seq/ENCSR824UNY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR824UNY [biosample_summary="Homo sapiens mesenchymal stem cell originated from H1" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN501TIZ|/analyses/ENCAN501TIZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF412PPW|/files/ENCFF412PPW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10792009 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF651ARP|/files/ENCFF651ARP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 36288059 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR824UNY | float |
Histone_ChIP-seq_ENCSR824UNY |
Histone_ChIP-seq ENCSR824UNY [biosample_summary="Homo sapiens mesenchymal stem cell originated from H1" and target="H3K36me3"]
|
 |
[1.71, 33.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 74277822 | 2.31% | 211910 |
| chr1 | 6522871 | 2.62% | 19613 |
| chr2 | 4724096 | 1.95% | 15682 |
| chr3 | 3710129 | 1.87% | 11848 |
| chr4 | 2318232 | 1.22% | 7461 |
| chr5 | 2848588 | 1.57% | 9129 |
| chr6 | 2699840 | 1.58% | 8977 |
| chr7 | 3813384 | 2.39% | 10943 |
| chr8 | 2420632 | 1.67% | 7528 |
| chr9 | 3852427 | 2.78% | 9955 |
| chr9_KI270718v1_random | 226 | 0.59% | 1 |
| chr10 | 3219551 | 2.41% | 10417 |
| chr11 | 4065926 | 3.01% | 10688 |
| chr12 | 3491663 | 2.62% | 10191 |
| chr13 | 1365930 | 1.19% | 4637 |
| chr14 | 2226833 | 2.08% | 6795 |
| chr14_GL000225v1_random | 963 | 0.46% | 4 |
| chr15 | 2274196 | 2.23% | 7241 |
| chr16 | 4203573 | 4.65% | 10355 |
| chr17 | 5058259 | 6.08% | 13021 |
| chr18 | 1157746 | 1.44% | 4091 |
| chr19 | 6491127 | 11.07% | 13378 |
| chr20 | 2578711 | 4.00% | 6943 |
| chr21 | 1034555 | 2.21% | 2720 |
| chr22 | 2949950 | 5.80% | 6754 |
| chr22_KI270733v1_random | 344 | 0.19% | 2 |
| chr22_KI270735v1_random | 184 | 0.43% | 1 |
| chrUn_GL000219v1 | 297 | 0.17% | 1 |
| chrUn_KI270442v1 | 794 | 0.20% | 3 |
| chrX | 1207670 | 0.77% | 3397 |
| chrY | 39125 | 0.07% | 134 |
| 3336 contigs with no values (128034016 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 211910 | 110 | 14623 | 350.52 | 231 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF051RNB.bed.gz | 4.42 MB | 018116da441801197e66d2f67dad1809 |
| ENCFF051RNB.tabix.bed.gz | 2.04 MB | 4e2c273fa8e20ee5a0c95b808d198a6a |
| ENCFF051RNB.tabix.bed.gz.tbi | 288.49 KB | 967516ad29e36f1f7ec641bfa5b92efb |
| genomic_resource.yaml | 2.46 KB | 194b23963ed6e8e6f495ab6e1d858025 |
| statistics/ |