Resource
| Id | Histone_ChIP-seq/ENCSR824PXG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR824PXG [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (37 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN507XQV|/analyses/ENCAN507XQV/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN507XQV|/analyses/ENCAN507XQV/} has in progress subobject document {1691cecc-41c6-45ec-a2ab-edb82cddfa52|/documents/1691cecc-41c6-45ec-a2ab-edb82cddfa52/} audit_not_compliant: Processed unfiltered alignments file {ENCFF736TLG|/files/ENCFF736TLG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 33074642 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR824PXG | float |
Histone_ChIP-seq_ENCSR824PXG |
Histone_ChIP-seq ENCSR824PXG [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (37 years)" and target="H3K9me3"]
|
 |
[1.94, 25.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 27886317 | 0.87% | 56233 |
| chr1 | 1740183 | 0.70% | 3493 |
| chr2 | 2134241 | 0.88% | 4624 |
| chr3 | 1864998 | 0.94% | 4036 |
| chr4 | 2124374 | 1.12% | 4720 |
| chr5 | 1839241 | 1.01% | 3968 |
| chr6 | 1432716 | 0.84% | 3023 |
| chr7 | 1653259 | 1.04% | 3391 |
| chr8 | 1442790 | 0.99% | 3283 |
| chr9 | 975605 | 0.70% | 1995 |
| chr10 | 1059790 | 0.79% | 2196 |
| chr11 | 1175498 | 0.87% | 2650 |
| chr12 | 1231595 | 0.92% | 2306 |
| chr13 | 895765 | 0.78% | 1995 |
| chr14 | 913449 | 0.85% | 1945 |
| chr15 | 552535 | 0.54% | 1003 |
| chr16 | 818342 | 0.91% | 1643 |
| chr17 | 497129 | 0.60% | 915 |
| chr18 | 633358 | 0.79% | 1461 |
| chr19 | 3286408 | 5.61% | 4229 |
| chr20 | 435607 | 0.68% | 914 |
| chr21 | 453334 | 0.97% | 949 |
| chr22 | 263158 | 0.52% | 454 |
| chrX | 350134 | 0.22% | 823 |
| chrY | 112808 | 0.20% | 217 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 56233 | 180 | 32206 | 495.91 | 378 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF454DPF.bed.gz | 1.07 MB | e427a0b3ea6e91b7ca8baf316da44151 |
| ENCFF454DPF.tabix.bed.gz | 548.2 KB | f3a971f44b12b7a4e88df93960e3359b |
| ENCFF454DPF.tabix.bed.gz.tbi | 266.6 KB | 635c9962eb763b81a9b765d0e25036ea |
| genomic_resource.yaml | 2.25 KB | b0bc3091e143c84556d34391eefca560 |
| statistics/ |