Histone_ChIP-seq_ENCSR822ZIG
Histone_ChIP-seq ENCSR822ZIG [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR822ZIG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR822ZIG [biosamplesummary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN522CXR|/analyses/ENCAN522CXR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF161QBO|/files/ENCFF161QBO/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 16317996 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF161QBO|/files/ENCFF161QBO/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF161QBO|/files/ENCFF161QBO/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.64. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR822ZIG | float |
Histone_ChIP-seq_ENCSR822ZIG |
Histone_ChIP-seq ENCSR822ZIG [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27ac"]
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[1.77, 54.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF688BLX.bed.gz | 976.44 KB | 9be773481da4b7acb2deb11e9dffc9a5 |
| ENCFF688BLX.bed.gz.dvc | 100.0 B | 322ee11d23e9c72a9e167c9c4c0d38a3 |
| ENCFF688BLX.tabix.bed.gz | 482.49 KB | 20e2970fe139262b697c943311758d61 |
| ENCFF688BLX.tabix.bed.gz.dvc | 106.0 B | c8bda3b10467186d6983abd9675de75b |
| ENCFF688BLX.tabix.bed.gz.tbi | 183.32 KB | 227d93614cd352e076d1689b0e739700 |
| ENCFF688BLX.tabix.bed.gz.tbi.dvc | 110.0 B | 4defcc2bc5c9dbeaf99c12b84b5ab641 |
| genomic_resource.yaml | 3.24 KB | 74a8de83cee4ca0d40c1d901bd7e0e26 |
| genomic_resource_original.yaml | 3.11 KB | d9322c7802ed97c75e4717b3931c2840 |
| statistics/ |