Resource
| Id | Histone_ChIP-seq/ENCSR822ZIG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR822ZIG [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN522CXR|/analyses/ENCAN522CXR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF161QBO|/files/ENCFF161QBO/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 16317996 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF161QBO|/files/ENCFF161QBO/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF161QBO|/files/ENCFF161QBO/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.64. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR822ZIG | float |
Histone_ChIP-seq_ENCSR822ZIG |
Histone_ChIP-seq ENCSR822ZIG [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27ac"]
|
 |
[1.77, 54.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 38536505 | 1.20% | 48126 |
| chr1 | 3826164 | 1.54% | 4780 |
| chr2 | 2676070 | 1.10% | 3477 |
| chr3 | 2226939 | 1.12% | 2835 |
| chr4 | 1174759 | 0.62% | 1574 |
| chr5 | 1873007 | 1.03% | 2332 |
| chr6 | 2072043 | 1.21% | 2596 |
| chr7 | 1847664 | 1.16% | 2376 |
| chr8 | 1472689 | 1.01% | 1880 |
| chr9 | 1701469 | 1.23% | 2148 |
| chr10 | 1708216 | 1.28% | 2191 |
| chr11 | 2270760 | 1.68% | 2669 |
| chr12 | 2265058 | 1.70% | 2777 |
| chr13 | 736420 | 0.64% | 1001 |
| chr14 | 1150613 | 1.07% | 1426 |
| chr15 | 1262272 | 1.24% | 1631 |
| chr16 | 1649759 | 1.83% | 1975 |
| chr17 | 2486711 | 2.99% | 2988 |
| chr18 | 523383 | 0.65% | 694 |
| chr19 | 2624835 | 4.48% | 2988 |
| chr20 | 1098734 | 1.70% | 1393 |
| chr21 | 391647 | 0.84% | 498 |
| chr22 | 982872 | 1.93% | 1196 |
| chrX | 493743 | 0.32% | 679 |
| chrY | 20678 | 0.04% | 22 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 48126 | 155 | 21030 | 800.74 | 555 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF688BLX.bed.gz | 976.44 KB | 9be773481da4b7acb2deb11e9dffc9a5 |
| ENCFF688BLX.tabix.bed.gz | 482.49 KB | 20e2970fe139262b697c943311758d61 |
| ENCFF688BLX.tabix.bed.gz.tbi | 183.32 KB | 227d93614cd352e076d1689b0e739700 |
| genomic_resource.yaml | 3.24 KB | 74a8de83cee4ca0d40c1d901bd7e0e26 |
| statistics/ |