Resource

Id Histone_ChIP-seq/ENCSR822EOScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR822EOS [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue female adult (80 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR822EOS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with squamous cell carcinoma; skin epidermis tissue female adult (80 years)
  • date_created: 2020-07-02T16:40:45.646120+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR822EOS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (80 years) with squamous cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR822EOS float

Histone_ChIP-seq_ENCSR822EOS
Histone_ChIP-seq ENCSR822EOS [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue female adult (80 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR822EOS [1.95, 49.6]
n
33,646,711
mean
18.2
sd
8.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 336467111.05% 20002
chr1 3436225 1.38% 2049
chr2 2300180 0.95% 1333
chr3 1856627 0.94% 1090
chr4 1236200 0.65% 710
chr5 1581992 0.87% 872
chr6 1948373 1.14% 1094
chr7 1606236 1.01% 991
chr8 1220000 0.84% 713
chr9 1370218 0.99% 846
chr10 1409216 1.05% 818
chr11 1892016 1.40% 1064
chr12 1797082 1.35% 1043
chr13 655249 0.57% 400
chr14 1102754 1.03% 631
chr15 1084652 1.06% 655
chr16 1378025 1.53% 832
chr17 2059808 2.47% 1212
chr18 541660 0.67% 330
chr19 2212537 3.77% 1447
chr20 882565 1.37% 541
chr21 336450 0.72% 197
chr22 789291 1.55% 479
chrX 949355 0.61% 655
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20002 235 11946 1682.17 1545
global segment-length histogram

Files

Filename Size md5
ENCFF903AVR.bed.gz 528.21 KB c034bb2fdd3146aaa8fe1d3a7f0445b5
ENCFF903AVR.tabix.bed.gz 231.96 KB f980b153b60ef60d12830aa2b7e94a9f
ENCFF903AVR.tabix.bed.gz.tbi 135.38 KB f25b1d66b5c27b040f3e9960948c62b4
genomic_resource.yaml 1.88 KB db0963013fab1168d246156c520d247a
statistics/