Resource
| Id | Histone_ChIP-seq/ENCSR820ABR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR820ABR [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (20 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN744XJS|/analyses/ENCAN744XJS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF886VJY|/files/ENCFF886VJY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 21019139 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR820ABR | float |
Histone_ChIP-seq_ENCSR820ABR |
Histone_ChIP-seq ENCSR820ABR [biosample_summary="Homo sapiens germinal matrix tissue male embryo (20 weeks)" and target="H3K9me3"]
|
 |
[2.13, 55.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 43872369 | 1.36% | 110147 |
| chr1 | 2580716 | 1.04% | 7019 |
| chr2 | 2906491 | 1.20% | 7961 |
| chr3 | 2295437 | 1.16% | 6462 |
| chr4 | 2706007 | 1.42% | 7076 |
| chr5 | 2572915 | 1.42% | 6743 |
| chr6 | 2092620 | 1.23% | 5903 |
| chr7 | 3129240 | 1.96% | 7478 |
| chr8 | 2345532 | 1.62% | 5489 |
| chr9 | 1397363 | 1.01% | 3709 |
| chr10 | 2001840 | 1.50% | 5001 |
| chr11 | 1904743 | 1.41% | 5256 |
| chr12 | 2159818 | 1.62% | 5129 |
| chr13 | 1278675 | 1.12% | 3404 |
| chr14 | 1716934 | 1.60% | 4259 |
| chr15 | 1297392 | 1.27% | 3161 |
| chr16 | 1684388 | 1.86% | 3603 |
| chr17 | 945878 | 1.14% | 2154 |
| chr18 | 900052 | 1.12% | 2380 |
| chr19 | 4205626 | 7.17% | 7812 |
| chr20 | 635080 | 0.99% | 1700 |
| chr21 | 1004438 | 2.15% | 2201 |
| chr22 | 374704 | 0.74% | 1019 |
| chrM | 287 | 1.73% | 1 |
| chrX | 1150780 | 0.74% | 3533 |
| chrY | 585413 | 1.02% | 1694 |
| 3341 contigs with no values (129060516 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 110147 | 105 | 46725 | 398.31 | 285 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF197DHO.bed.gz | 1.91 MB | 3a2c82aefee1f68b9c59cbc084600cb8 |
| ENCFF197DHO.tabix.bed.gz | 1012.6 KB | e16537464cac5d3e916121568748705f |
| ENCFF197DHO.tabix.bed.gz.tbi | 358.53 KB | f1eed16844047c2a206e90cc5679b648 |
| genomic_resource.yaml | 2.01 KB | 02e5356d5777caa8c992faa7ef97c4b4 |
| statistics/ |