Resource

Id Histone_ChIP-seq/ENCSR819HSScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR819HSS [biosample_summary="Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR819HSS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000594/
  • biosample_summary: Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell
  • date_created: 2015-09-15T19:48:41.616322+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR819HSS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult
  • status: released
  • submitter_comment: Experiment b8eaa61e-0cc9-4e4b-bf3f-7718357fbb6f merged into base. Experiment 4a4dc6c7-6895-4ff2-bd06-5d491ab7d13e merged into base.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR819HSS float

Histone_ChIP-seq_ENCSR819HSS
Histone_ChIP-seq ENCSR819HSS [biosample_summary="Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR819HSS [1.62, 73.3]
n
52,704,410
mean
21.4
sd
13.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 527044101.64% 47912
chr1 5107582 2.05% 4553
chr2 3926960 1.62% 3773
chr3 3099939 1.56% 2839
chr4 2282870 1.20% 2116
chr5 2645333 1.46% 2467
chr6 3207295 1.88% 2904
chr7 2539501 1.59% 2344
chr8 2101184 1.45% 2051
chr9 2245047 1.62% 2128
chr10 2348583 1.76% 2241
chr11 2809561 2.08% 2426
chr12 2851353 2.14% 2494
chr13 1248733 1.09% 1236
chr14 1673764 1.56% 1462
chr15 1740681 1.71% 1603
chr16 1952108 2.16% 1674
chr17 2822524 3.39% 2500
chr18 935282 1.16% 898
chr19 2801738 4.78% 2304
chr20 1247868 1.94% 1161
chr21 565599 1.21% 564
chr22 1089948 2.14% 968
chrX 1460957 0.94% 1206
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47912 170 21770 1100.03 637
global segment-length histogram

Files

Filename Size md5
ENCFF393SDC.bed.gz 1.27 MB 61bc645d808bea145098816cb6c972c4
ENCFF393SDC.tabix.bed.gz 544.09 KB 789b4685e76a2b9478ad7e33dad7f4be
ENCFF393SDC.tabix.bed.gz.tbi 230.68 KB da6db4289525c212fa609b2197cca9dc
genomic_resource.yaml 1.73 KB bf8cd900d18003802b51d63330c936d9
statistics/