Resource

Id Histone_ChIP-seq/ENCSR817QHXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR817QHX [biosample_summary="Homo sapiens endocrine pancreas tissue adult (59 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR817QHX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000016/
  • biosample_summary: Homo sapiens endocrine pancreas tissue adult (59 years)
  • date_created: 2015-09-15T20:27:26.050727+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR817QHX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: adult (59 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR817QHX float

Histone_ChIP-seq_ENCSR817QHX
Histone_ChIP-seq ENCSR817QHX [biosample_summary="Homo sapiens endocrine pancreas tissue adult (59 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR817QHX [2.47, 6.83]
n
3,961,779
mean
3.41
sd
0.622

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 39617790.12% 22542
chr1 455714 0.18% 2596
chr2 344022 0.14% 2001
chr3 239663 0.12% 1343
chr4 157298 0.08% 882
chr5 186867 0.10% 1050
chr6 202616 0.12% 1125
chr7 172877 0.11% 991
chr8 150128 0.10% 829
chr9 142823 0.10% 796
chr10 224245 0.17% 1302
chr11 230196 0.17% 1292
chr12 212706 0.16% 1239
chr13 125768 0.11% 747
chr14 159651 0.15% 905
chr15 147012 0.14% 851
chr16 139312 0.15% 782
chr17 210072 0.25% 1173
chr18 94398 0.12% 562
chr19 115253 0.20% 644
chr20 112959 0.18% 632
chr21 33750 0.07% 191
chr22 68073 0.13% 375
chrX 36376 0.02% 234
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22542 135 780 175.75 135
global segment-length histogram

Files

Filename Size md5
ENCFF518VHC.bed.gz 324.69 KB 853e03f34aeb8c58727eadcc77fc4ba8
ENCFF518VHC.tabix.bed.gz 184.03 KB 445c078118b8284e05489686e6b55ae7
ENCFF518VHC.tabix.bed.gz.tbi 147.88 KB 535fc8d710beab29123293af195a6dd8
genomic_resource.yaml 1.98 KB 2a483a04543fa026194fbe7e90c25008
statistics/