Histone_ChIP-seq_ENCSR817LUF
Histone_ChIP-seq ENCSR817LUF [biosample_summary="Homo sapiens brain tissue female embryo (120 days)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR817LUF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR817LUF [biosamplesummary="Homo sapiens brain tissue female embryo (120 days)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (120 days) output_type: pseudoreplicated peaks audit_internal_action: Released file {ENCFF803UAK|/files/ENCFF803UAK/} has revoked subobject file {ENCFF445RZC|/files/ENCFF445RZC/} audit_internal_action: Released analysis {ENCAN622WHH|/analyses/ENCAN622WHH/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF465HGP|/files/ENCFF465HGP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 27081532 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: The md5 sum of file {ENCFF803UAK|/files/ENCFF803UAK/} matches that of file(s) {ENCFF445RZC|/files/ENCFF445RZC/}. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF465HGP|/files/ENCFF465HGP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF465HGP|/files/ENCFF465HGP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.71. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR817LUF | float |
Histone_ChIP-seq_ENCSR817LUF |
Histone_ChIP-seq ENCSR817LUF [biosample_summary="Homo sapiens brain tissue female embryo (120 days)" and target="H3K36me3"]
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[1.81, 33.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF803UAK.bed.gz | 1.75 MB | a049e9b624a17abbf8140587e4b72b81 |
| ENCFF803UAK.bed.gz.dvc | 101.0 B | db41f3062f1df9646f21a0ac8e5e693d |
| ENCFF803UAK.tabix.bed.gz | 930.8 KB | ec0a8c50f8a2a03f44dcdd9cbd6ecb11 |
| ENCFF803UAK.tabix.bed.gz.dvc | 106.0 B | 686b0318dba692aa22a716353e1c6c7a |
| ENCFF803UAK.tabix.bed.gz.tbi | 201.26 KB | cea25e830269f27ba7def11a2a9f754c |
| ENCFF803UAK.tabix.bed.gz.tbi.dvc | 110.0 B | 1d2d292e3e4342fc42ab11c63d3e06d9 |
| genomic_resource.yaml | 3.63 KB | f1d7ae210cdbc3467b24e4cc3f524fa1 |
| genomic_resource_original.yaml | 3.5 KB | 7651a656e6a0733f7ac4503cc3600212 |
| statistics/ |