Resource
| Id | Histone_ChIP-seq/ENCSR816NKX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR816NKX [biosample_summary="Homo sapiens B cell male adult (21 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN309VCK|/analyses/ENCAN309VCK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN309VCK|/analyses/ENCAN309VCK/} has in progress subobject document {d0fb72be-c83c-42da-b4d8-af15a81d88c1|/documents/d0fb72be-c83c-42da-b4d8-af15a81d88c1/} audit_not_compliant: Processed alignments file {ENCFF207YSM|/files/ENCFF207YSM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 22597809 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR816NKX | float |
Histone_ChIP-seq_ENCSR816NKX |
Histone_ChIP-seq ENCSR816NKX [biosample_summary="Homo sapiens B cell male adult (21 years)" and target="H3K36me3"]
|
 |
[1.83, 20.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 129072700 | 4.01% | 154521 |
| chr1 | 12552868 | 5.04% | 14326 |
| chr2 | 10774773 | 4.45% | 12642 |
| chr3 | 8316920 | 4.19% | 10031 |
| chr4 | 5167106 | 2.72% | 6510 |
| chr5 | 6715641 | 3.70% | 7952 |
| chr6 | 6522585 | 3.82% | 7725 |
| chr7 | 5854309 | 3.67% | 7618 |
| chr8 | 4587472 | 3.16% | 5727 |
| chr9 | 5527367 | 3.99% | 6251 |
| chr10 | 5730830 | 4.28% | 6833 |
| chr11 | 6413917 | 4.75% | 7222 |
| chr12 | 6878835 | 5.16% | 8172 |
| chr13 | 2605290 | 2.28% | 3364 |
| chr14 | 4336441 | 4.05% | 5317 |
| chr15 | 4647869 | 4.56% | 5569 |
| chr16 | 6047711 | 6.69% | 6999 |
| chr17 | 6750704 | 8.11% | 7849 |
| chr18 | 2187057 | 2.72% | 2853 |
| chr19 | 6283823 | 10.72% | 7294 |
| chr20 | 3870996 | 6.01% | 4443 |
| chr21 | 1469346 | 3.15% | 1746 |
| chr22 | 3533786 | 6.95% | 4001 |
| chrX | 2144014 | 1.37% | 3781 |
| chrY | 153040 | 0.27% | 296 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 154521 | 165 | 22717 | 835.31 | 569 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF769YLP.bed.gz | 3.02 MB | 4296a52b6452e359c9ce67d0b78d160d |
| ENCFF769YLP.tabix.bed.gz | 1.47 MB | 7b1ac9aee4b49fa26916f35e44119b6b |
| ENCFF769YLP.tabix.bed.gz.tbi | 162.51 KB | b5322c9dc217b303afda5763b3f49a35 |
| genomic_resource.yaml | 2.17 KB | 6e8c0d4b67d5da9ae54f72f2a2c7747a |
| statistics/ |